View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5876-56 (Length: 107)
Name: Solexa-NF5876-56
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5876-56 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 8e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 8e-46
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 23047122 - 23047022
Alignment:
| Q |
7 |
atgattgaagatactgggattggatgaagataaagatgttgcttgaatttcgttttccagaatttcaatttgaagatgaattgatgaaggattgaatgga |
106 |
Q |
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| T |
23047122 |
atgattgaagatactgggattggatgaagataaagatgctgcttgaatttcgttttccagaattttaatttgaagatgaattgatgaaggattgaatgga |
23047023 |
T |
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| Q |
107 |
a |
107 |
Q |
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| T |
23047022 |
a |
23047022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 44098580 - 44098680
Alignment:
| Q |
7 |
atgattgaagatactgggattggatgaagataaagatgttgcttgaatttcgttttccagaatttcaatttgaagatgaattgatgaaggattgaatgga |
106 |
Q |
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| T |
44098580 |
atgattgaagatactgggagtggatgaagataaagatactgcttgaatttcgttttccagaatttcaatttgaagatgaattgatgaaggattgaatgga |
44098679 |
T |
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| Q |
107 |
a |
107 |
Q |
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| T |
44098680 |
a |
44098680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 45517608 - 45517651
Alignment:
| Q |
60 |
tttccagaatttcaatttgaagatgaattgatgaaggattgaat |
103 |
Q |
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| T |
45517608 |
tttccaaaatttcgatttgaagatgaattgatgaaggattgaat |
45517651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 45268231 - 45268289
Alignment:
| Q |
50 |
tgaatttcgttttccagaatttcaattt---gaagatgaattgatgaaggattgaatgg |
105 |
Q |
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| T |
45268231 |
tgaatttcgttttctagaatcttaatttaaagaagatgaattgatgaaggtttgaatgg |
45268289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 24426331 - 24426274
Alignment:
| Q |
50 |
tgaatttcgttttccagaatttcaatttga---agatgaattgatgaaggattgaatg |
104 |
Q |
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| T |
24426331 |
tgaatttagttttccagaattttgatttgattaagatgaattgatgaagcattgaatg |
24426274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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