View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5876-7 (Length: 179)
Name: Solexa-NF5876-7
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5876-7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 7e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 7e-91
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 31664207 - 31664379
Alignment:
| Q |
7 |
agttccttgttcaacaagccttctcttttttgtcacggtcacggcttcttcaagctcctttttcttctctttttgttggagtagttggtgaatgaagaca |
106 |
Q |
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| T |
31664207 |
agttccttgttcaacaagccttctcttttttgtcacggtcacggcttcttcaagctcctttttcttctctttttgttggagtagttggtgaatgaagaca |
31664306 |
T |
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| Q |
107 |
gggtttttcatagctctagctaagaaagacatcattttcttctgattgatttttatcccttctaacctttgct |
179 |
Q |
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| T |
31664307 |
gggtttttcatagctctagctaagaaagacatcattttcttctgattgatttttatcccttctaacctatgct |
31664379 |
T |
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