View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-1 (Length: 282)
Name: Solexa-NF5877-1
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-1 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 8832090 - 8831818
Alignment:
| Q |
7 |
caaatatatcagtataatatattataagaatattacaccacccaaccgttagattgaaagtttatatacatttctttaaggagttgaaagtttatatgtt |
106 |
Q |
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| T |
8832090 |
caaatatatcagtataatatattataagaatattaaaccacccaaccgttagattgaaagtttatatacatttctttaaggagttgaaagtttatatgtt |
8831991 |
T |
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| Q |
107 |
ttctataatttatacgtaagtgtattgttttagactgtactaaaaccttaaattccactcatacagcacctaaagtccaaacacataacccaatacctat |
206 |
Q |
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| T |
8831990 |
ttctataatttatatgtaagtgtattgttttagactgtactaaaaccttaaattccactcatacagcacccaaagtccaaacacataacccaatacctat |
8831891 |
T |
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| Q |
207 |
gctactccactttaggatccatgcaggtcaggtccgtaactcttttcaacgtttatatgcgctgatcgtaact |
279 |
Q |
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| T |
8831890 |
gatccggaagcttaggatccatgcaggtcaggtccgtaacgcttttcaacgtttatatgcgctgatcgtaact |
8831818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 171
Target Start/End: Original strand, 6968000 - 6968128
Alignment:
| Q |
54 |
gttagattgaaagtttatataca-tttctttaaggagttgaaagtttata---------tgttttctat-aatttatacgtaagtgtattgttttagact |
142 |
Q |
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| T |
6968000 |
gttagatcgaaagtttatatacattttttttaaggaattgaaagtttatattatacagctcatttctataaatttatatgtatgtgtattattttagact |
6968099 |
T |
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| Q |
143 |
gtactaaaaccttaaattccactcataca |
171 |
Q |
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| T |
6968100 |
ggactaaaaccctaaattcaactcataca |
6968128 |
T |
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