View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-10 (Length: 221)
Name: Solexa-NF5877-10
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 28842215 - 28842435
Alignment:
| Q |
1 |
aggtatagtgtatgatagctttacaccatgtttaacaaggaacttctaaaacaaaaacccctagatactacttagtaaatagtgagtagctctatgccta |
100 |
Q |
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| T |
28842215 |
aggtatagtgtacgatagctttacaccatgtttaacaaggaacttctaaaacaaaaacccctagatactaattagtaaatagtgattagctctatgccta |
28842314 |
T |
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| Q |
101 |
aaaattctacttctacaactagtcaagccaaaagaagtaaagtgagcagtatcccagtcccacagtccgtgattttttaactacaggcaataaggaaaac |
200 |
Q |
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| T |
28842315 |
aaaattctacttctacaactagtcaagccaaaagaaataaagtgagcagtatcccagtcccacagtccgtgattttttaactacaggcaataaggaaaac |
28842414 |
T |
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| Q |
201 |
atttgaacgtaccccacaaat |
221 |
Q |
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| T |
28842415 |
atttgaacgtaccccacaaat |
28842435 |
T |
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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 28828219 - 28828279
Alignment:
| Q |
161 |
cacagtccgtgattttttaactacaggcaataaggaaaacatttgaacgtaccccacaaat |
221 |
Q |
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| T |
28828219 |
cacagtccttgatttattaactacaggcaatgagaaaaataattgaacataccccacaaat |
28828279 |
T |
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