View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-15 (Length: 145)
Name: Solexa-NF5877-15
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-15 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 41083366 - 41083222
Alignment:
| Q |
1 |
gtgagatgaagtctacggtcacttgtaagcatttgttcaggctatatcatttttcagcgtaagactcttacctctcacatctaagactgaacatctaaaa |
100 |
Q |
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| T |
41083366 |
gtgagatgaagactacggtcacttgtaagcatttgttcaggctatatcatttttcagcgtaagactcttacctctcacatctaagactgaacatctaaaa |
41083267 |
T |
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| Q |
101 |
catgactcgagtggtccgatagtggaaagctagtagccgatggtc |
145 |
Q |
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| T |
41083266 |
cgtgacttgagtggtccgatagtggaaagctagtagccgatggtc |
41083222 |
T |
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Target: scaffold0003 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 318854 - 318897
Alignment:
| Q |
73 |
tctcacatctaagactgaacatctaaaacatgactcgagtggtc |
116 |
Q |
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| T |
318854 |
tctcacgtctaagactgaacatttaaaatatgactcaagtggtc |
318897 |
T |
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