View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-16 (Length: 142)
Name: Solexa-NF5877-16
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 2e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 2e-68
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 55977871 - 55977733
Alignment:
| Q |
4 |
cataggaagtgaaagattggtcaccgccgttaccgttttcggtgtaagagttgaaggattgagttctaccgttggcgttatcggagtaagaagtgaaaac |
103 |
Q |
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| T |
55977871 |
cataggaagtgaaagattggtcaccgccgttaccgttttcggtgtaagagttgaaggattgagttctaccgttggcgttatcggagtaagaagtgaaaac |
55977772 |
T |
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| Q |
104 |
ttcatttggaacgttggcttcagttgtgtattgcttgaa |
142 |
Q |
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| T |
55977771 |
ttcgtttggaacgttggcttcagttgtgcattgcttgaa |
55977733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 1e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 6 - 134
Target Start/End: Complemental strand, 14865542 - 14865414
Alignment:
| Q |
6 |
taggaagtgaaagattggtcaccgccgttaccgttttcggtgtaagagttgaaggattgagttctaccgttggcgttatcggagtaagaagtgaaaactt |
105 |
Q |
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| T |
14865542 |
taggaagtgaaagattgttgaccgctgttaccgttttctgtgtaagagttgaaggattgtgttcttccgttggcgctatcggagtaagaagtgaaaactt |
14865443 |
T |
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| Q |
106 |
catttggaacgttggcttcagttgtgtat |
134 |
Q |
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| T |
14865442 |
cgtttggaacgttggtttcagttgtgtat |
14865414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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