View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-18 (Length: 141)
Name: Solexa-NF5877-18
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-18 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 3e-46; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 29528624 - 29528761
Alignment:
| Q |
4 |
agagaagataaccgtagattatagcaacaaaaatcagcatccagttgatggttaacagttgaactgtaaagcaacctaagaaatatgagaacacaccaat |
103 |
Q |
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| T |
29528624 |
agagaagaaaacagtagattatggcaacaaaaatcaatatccagttgattgttaacagttgaactgtaaagcaacataagaaatatgagaatatacccat |
29528723 |
T |
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| Q |
104 |
ctcagacttaaacttaaacagtttgtgcaagcttaatg |
141 |
Q |
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| T |
29528724 |
ctcagacttcaacttaaacagtttgtgcaagcttaatg |
29528761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 29526618 - 29526753
Alignment:
| Q |
4 |
agagaagataaccgtagattatagcaacaaaaatcagcatccagttgatggttaacagttgaactgtaaagcaacctaagaaatatgagaacacaccaat |
103 |
Q |
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| T |
29526618 |
agagcagacaaccgtagattatggcaacaaaaatcaatatccagttgatggtcaacagttgaattgtaaagcaacctaagaaataagagaacccaccaat |
29526717 |
T |
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| Q |
104 |
ctcagacttaaacttaaacagtttgtgcaagcttaa |
139 |
Q |
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| T |
29526718 |
ctcaaacccaaagttagtgagtttgtgcaagcttaa |
29526753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 29474974 - 29475088
Alignment:
| Q |
27 |
gcaacaaaaatcagcatccagttgatggttaacagttgaactgtaaagcaacctaagaaatatgagaacacaccaatctcagacttaaacttaaacagtt |
126 |
Q |
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| T |
29474974 |
gcaacaaaaataaacatccagttgatggttaacagttgaactgtaaagcaacctaagaaataagagaatacaccaatctcaaacccaaagttaatcagtt |
29475073 |
T |
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| Q |
127 |
tgtgcaagcttaatg |
141 |
Q |
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| T |
29475074 |
tgtgtaaacttaatg |
29475088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 28183991 - 28183857
Alignment:
| Q |
4 |
agagaagataaccgtagattatagcaacaaaaatcagcatccagttgatggttaacagttgaactgtaaagcaacctaagaaatatgagaacacaccaat |
103 |
Q |
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|||| ||| ||||| ||||||| |||| ||| ||| || ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| || |
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| T |
28183991 |
agagcagaaaaccgaagattatggcaaaaaagttcaacacccagttgatggttaacagttgaattgtaaagcaacctacaaaataagagaacacacccat |
28183892 |
T |
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| Q |
104 |
ctcagacttaaacttaaacagtttgtgcaagctta |
138 |
Q |
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| T |
28183891 |
ctcaaccccaaacttaagcagtctgtgcaagctta |
28183857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 29525037 - 29524968
Alignment:
| Q |
19 |
agattatagcaacaaaaatcagcatccagttgatggttaacagttgaactgtaaagcaacctaagaaata |
88 |
Q |
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| T |
29525037 |
agattatagcaaccgaaatcagcatccaattgatggtccacagttgaactgctaggcaacctaggaaata |
29524968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 29612826 - 29612757
Alignment:
| Q |
19 |
agattatagcaacaaaaatcagcatccagttgatggttaacagttgaactgtaaagcaacctaagaaata |
88 |
Q |
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| T |
29612826 |
agattatagcaaccaaaatcagcatccaattgatggtccacagttgaaccacaaggcaacctaggaaata |
29612757 |
T |
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