View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-19 (Length: 137)
Name: Solexa-NF5877-19
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 39824006 - 39824096
Alignment:
| Q |
47 |
aggacatagaatcataaacatatgagtttgaatttgatagggtttcatcaggaatataatgaagcatcatgtgacaatttataaccaaagc |
137 |
Q |
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| T |
39824006 |
aggacatagaatcataaacatatgagtttgaatttgatagggtttcatcaggaatataatgaagcatcatgtgacaatttataaccaaagc |
39824096 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 5617396 - 5617345
Alignment:
| Q |
83 |
atagggtttcatcaggaatataatgaagcatcatgtgacaatttataaccaa |
134 |
Q |
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| T |
5617396 |
atagagtttcgtcaggaatataatgaagcatcatgtgacagtttataaccaa |
5617345 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 21162683 - 21162632
Alignment:
| Q |
83 |
atagggtttcatcaggaatataatgaagcatcatgtgacaatttataaccaa |
134 |
Q |
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| T |
21162683 |
atagagtttcgtcaggaatataatgaagcatcatgtgacagtttataaccaa |
21162632 |
T |
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