View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-20 (Length: 136)
Name: Solexa-NF5877-20
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 5e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 8831574 - 8831706
Alignment:
| Q |
4 |
aagaactatgtgatgcttttgtcaaacacatcattgattgtaatgcaaaaagacttaatttttccaacaaattgattgtgatgttgatcatcagtaatag |
103 |
Q |
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| T |
8831574 |
aagaactatgtgatgcttttgtcaaacacatcattcattgtaacgcaaaaagacttaatttttccaacaaattgattgtgatgttgatcattagtaatag |
8831673 |
T |
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| Q |
104 |
tagtgataaaggcatacatagattatttcttgc |
136 |
Q |
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| T |
8831674 |
tagtgagaaaggcatacatagattatttcttgc |
8831706 |
T |
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Target: chr1 (Bit Score: 28; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 43909611 - 43909572
Alignment:
| Q |
52 |
aaagacttaatttttccaacaaattgattgtgatgttgat |
91 |
Q |
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| T |
43909611 |
aaagacttaattttccgaacaaattgatcgtgatgttgat |
43909572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 43993195 - 43993234
Alignment:
| Q |
52 |
aaagacttaatttttccaacaaattgattgtgatgttgat |
91 |
Q |
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| T |
43993195 |
aaagacttatgttttccaataaattgattgtgatgttgat |
43993234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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