View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-23 (Length: 132)
Name: Solexa-NF5877-23
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-23 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 3e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 3e-64
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 39678005 - 39677874
Alignment:
| Q |
1 |
gaaataattccatcacaaatagtaaaatttatagatcttcgttttttggtacaaaaaattattgatcttcttgtatgtataaataaatctaaaatgacaa |
100 |
Q |
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| T |
39678005 |
gaaataattccatcacaaatagtaaaatttatagatcttcgttttttggtacaaaaaattattgatcttcttatatgtataaataaatctaaaatgacaa |
39677906 |
T |
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| Q |
101 |
tcacaacgaaaggaggtaaataacaattataa |
132 |
Q |
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| T |
39677905 |
tcaaaacgaaaggaggtaaataacaattataa |
39677874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 10876637 - 10876689
Alignment:
| Q |
45 |
tttggtacaaaaaattattgatcttcttgtatgtataaataaatctaaaatga |
97 |
Q |
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| T |
10876637 |
tttggaacaaaaatttattgatcttcttgtttgtgtaaataaacctaaaatga |
10876689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 10881708 - 10881760
Alignment:
| Q |
45 |
tttggtacaaaaaattattgatcttcttgtatgtataaataaatctaaaatga |
97 |
Q |
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| T |
10881708 |
tttggaacaaaaatttattgatcttcttgtttgtgtaaataaacctaaaatga |
10881760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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