View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-3 (Length: 209)
Name: Solexa-NF5877-3
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 46618587 - 46618376
Alignment:
| Q |
8 |
aaatccaacctaattttttaacatcttaactgtaactgattcaccnnnnnnnnnnnnnnnnggaggaatttgcttttttgtaatattagaaaatctggtt |
107 |
Q |
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| T |
46618587 |
aaatccaacctaattttttaacatcttaactgtaactgattcaccttttttttttttttttggaggaatttgcttttttgta-tattagaaaatctggtt |
46618489 |
T |
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| Q |
108 |
catgaatggtgcaatcaaacagaagca-----------gaaaaattaggaaagcctaaatcattcccctacgtatgcacgatacataaaaggaactttat |
196 |
Q |
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| T |
46618488 |
catgaatggtgcaatcaaacagaagcacatgagaagcagaaaaattaggaaagcctaaatcattcccctacgtatgcaccatacataaaaggaactttat |
46618389 |
T |
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| Q |
197 |
ttgcaatgtatac |
209 |
Q |
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| T |
46618388 |
ttgcaatgtatac |
46618376 |
T |
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