View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5877-33 (Length: 126)
Name: Solexa-NF5877-33
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-33 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 120; Significance: 8e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 41082611 - 41082730
Alignment:
| Q |
7 |
agttatctcataaatctaagtttgctatgtttctattttactgaaacttcatttattgataacttaatcaactgattagttatgaatacaaaagactcta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41082611 |
agttatctcataaatctaagtttgctatgtttctattttactgaaacttcatttattgataacttaatcaactgattagttatgaatacaaaagactcta |
41082710 |
T |
|
| Q |
107 |
tttatacatacagtccatat |
126 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41082711 |
tttatacatacagtccatat |
41082730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 37067907 - 37067966
Alignment:
| Q |
55 |
tcatttattgataacttaatcaactgattagttatgaatacaaaagactctatttatacat |
115 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||||||||| || ||||||||||| |||| |
|
|
| T |
37067907 |
tcatttattgataacttgatcaattgattaattatgaatac-aaggactctatttacacat |
37067966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 37060431 - 37060499
Alignment:
| Q |
55 |
tcatttattgataacttaatcaactgattagttatgaatacaaaagactctatttatacatac-agtccata |
125 |
Q |
| |
|
||||||||||||||||| | ||| |||||| | |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
37060431 |
tcatttattgataacttgaccaattgattaataatgaatac---agactctatttatacatactagtccata |
37060499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 45369916 - 45369944
Alignment:
| Q |
88 |
atgaatacaaaagactctatttatacata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
45369916 |
atgaatacaaaagactctatttatacata |
45369944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 47823180 - 47823239
Alignment:
| Q |
56 |
catttattgataacttaatcaactgattagttatgaatacaaaagactctatttatacat |
115 |
Q |
| |
|
|||||| ||||||||| ||||| |||| | | ||||||||||||||||| | |||||||| |
|
|
| T |
47823180 |
catttagtgataacttgatcaattgatgaataatgaatacaaaagactcgacttatacat |
47823239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University