View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-34 (Length: 126)
Name: Solexa-NF5877-34
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-34 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 1e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 1699003 - 1698896
Alignment:
| Q |
7 |
atatataactttcatgtgtgtataacaatttacttcgtgattattttgatacctacctcagttaggagaggatgattatccgtgaggacataactgaata |
106 |
Q |
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| T |
1699003 |
atatataactttcatgtgtgtataacaatttacttcgtgattattttgatacctacctcagttaggagaggatgattatccgtgaggacataactgaata |
1698904 |
T |
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| Q |
107 |
gataaagg |
114 |
Q |
| |
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|||||||| |
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| T |
1698903 |
gataaagg |
1698896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 36000744 - 36000637
Alignment:
| Q |
7 |
atatataactttcatgtgtgtataacaatttacttcgtgattattttgatacctacctcagttaggagaggatgattatccgtgaggacataactgaata |
106 |
Q |
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|||||||| ||| |||||||||| | | | ||||| |||||||||||| || ||||||| ||||||||| ||||||||| | || ||||||||||| | |
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| T |
36000744 |
atatataattttgatgtgtgtattaaagtgtactttgtgattattttgggacttacctcaactaggagagggtgattatccttaagaacataactgaaca |
36000645 |
T |
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| Q |
107 |
gataaagg |
114 |
Q |
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||||||| |
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| T |
36000644 |
aataaagg |
36000637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 8e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 41921685 - 41921580
Alignment:
| Q |
9 |
atataactttcatgtgtgtataacaatttacttcgtgattattttgatacctacctcagttaggagaggatgattatccgtgaggacataactgaataga |
108 |
Q |
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||||||||||||||||| || || | |||||| ||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||| ||| |
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| T |
41921685 |
atataactttcatgtgtataaaaaagcttactttgtgattattttgacacctacctcagctagaagagggtgattatccgtgaggacataactgaacaga |
41921586 |
T |
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| Q |
109 |
taaagg |
114 |
Q |
| |
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| |||| |
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|
| T |
41921585 |
ttaagg |
41921580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 1310130 - 1310028
Alignment:
| Q |
9 |
atataactttcatgtgtgtataacaatttacttcgtgattattttgatacctacctcagttaggagaggatgattatccgtgaggacataactgaataga |
108 |
Q |
| |
|
||||||| ||||||||||||||| || |||||||||||||||| ||||||||| ||||||||| |||| |||||| |||||||||||||||||| |
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| T |
1310130 |
atataaccttcatgtgtgtataaaaaaag-cttcgtgattattttgctacctaccttgactaggagagggtgatcatccgttaggacataactgaataga |
1310032 |
T |
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| Q |
109 |
taaa |
112 |
Q |
| |
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|||| |
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|
| T |
1310031 |
taaa |
1310028 |
T |
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