View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-35 (Length: 126)
Name: Solexa-NF5877-35
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-35 |
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Alignment Details
Target: chr1 (Bit Score: 69; Significance: 2e-31; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 8139409 - 8139337
Alignment:
| Q |
8 |
caagactcatacaagagcagagacatcgttccaaaaacagtgatattcaagcatgcattcagtaacaaagact |
80 |
Q |
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| T |
8139409 |
caagactcatacaagagcagagacatcattccaaaaacagtgatattcaagcatgcattcagtaacaaagact |
8139337 |
T |
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Target: chr1; HSP #2
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 7499515 - 7499590
Alignment:
| Q |
8 |
caagactcatacaagagcagagacatcgttccaaaaacagtgatattcaagcatgcattcagtaacaaagactcaa |
83 |
Q |
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| T |
7499515 |
caagactcataaaagagcagaaacatcattccaaaaacagtgatgttcaagcatgcattcagtaacaaagactcaa |
7499590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 7502878 - 7502928
Alignment:
| Q |
28 |
agacatcgttccaaaaacagtgatattcaagcatgcattcagtaacaaaga |
78 |
Q |
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||||||| |||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
7502878 |
agacatcattccaaaaacagtgatatccaagcatgcaatcagtaacaaaga |
7502928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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