View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-37 (Length: 123)
Name: Solexa-NF5877-37
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-37 |
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| [»] scaffold0722 (1 HSPs) |
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Alignment Details
Target: scaffold0722 (Bit Score: 123; Significance: 1e-63; HSPs: 1)
Name: scaffold0722
Description:
Target: scaffold0722; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 3006 - 2884
Alignment:
| Q |
1 |
aacatcaaacccatttcttatcttacttcactctctttcttaaacctttcaaacaactctttgaatggtagtttcccgtctgattttccttctctaaaca |
100 |
Q |
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| T |
3006 |
aacatcaaacccatttcttatcttacttcactctctttcttaaacctttcaaacaactctttgaatggtagtttcccgtctgattttccttctctaaaca |
2907 |
T |
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| Q |
101 |
atcttaaattcctcaacatctca |
123 |
Q |
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| T |
2906 |
atcttaaattcctcaacatctca |
2884 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 35882191 - 35882261
Alignment:
| Q |
49 |
tcaaacaactctttgaatggtagtttcccgtctgattttccttctctaaacaatcttaaattcctcaacat |
119 |
Q |
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| T |
35882191 |
tcaaacaacactttaactggtaatttcccttctgattttcctccacttcacaatcttaaatttctcaacat |
35882261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 24456392 - 24456462
Alignment:
| Q |
49 |
tcaaacaactctttgaatggtagtttcccgtctgattttccttctctaaacaatcttaaattcctcaacat |
119 |
Q |
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| T |
24456392 |
tcaaacaacactttaactggtaatttcccttctgattttcctccacttcacaatcttaaatttctcaacat |
24456462 |
T |
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