View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5877-39 (Length: 121)

Name: Solexa-NF5877-39
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5877-39
Solexa-NF5877-39
[»] chr7 (1 HSPs)
chr7 (1-105)||(20918811-20918915)
[»] chr6 (3 HSPs)
chr6 (3-88)||(1104150-1104235)
chr6 (4-78)||(13497360-13497434)
chr6 (39-84)||(2923718-2923763)
[»] chr4 (1 HSPs)
chr4 (2-85)||(55464087-55464170)
[»] chr8 (2 HSPs)
chr8 (1-52)||(16048147-16048198)
chr8 (3-70)||(18187997-18188064)
[»] chr2 (1 HSPs)
chr2 (38-81)||(32191943-32191986)


Alignment Details
Target: chr7 (Bit Score: 93; Significance: 1e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 20918811 - 20918915
Alignment:
Q  1 agcagagaagtcaggacatacttaagaaggatcaagaaaccaccaaaagaaagaaatcaactcttccacccaaacaatctatttctaacacggggatgaa 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  20918811 agcagagaagtcaggacatacttaagaaggatcaaaaaaccaccaaaagaaagaaatcaactcttccacccaaacaatctatttctaatacgggtatgaa 20918910  T
Q  101 ccgga 105  Q
    |||||    
T  20918911 ccgga 20918915  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 1104235 - 1104150
Alignment:
Q  3 cagagaagtcaggacatacttaagaaggatcaagaaaccaccaaaagaaagaaatcaactcttccacccaaacaatctatttctaa 88  Q
    |||||||||||| ||| ||||| ||| |||||||  |||||||||||||||||| |  |||||||||||||| | |||||||||||    
T  1104235 cagagaagtcagtacaaacttaggaacgatcaagcgaccaccaaaagaaagaaagcggctcttccacccaaatattctatttctaa 1104150  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 13497434 - 13497360
Alignment:
Q  4 agagaagtcaggacatacttaagaaggatcaagaaaccaccaaaagaaagaaatcaactcttccacccaaacaat 78  Q
    ||||||||||||||| |||||||||| |||||  ||||  |||| |||||||| | |||||| || |||||||||    
T  13497434 agagaagtcaggacaaacttaagaagaatcaaacaaccttcaaaggaaagaaaacgactctttcaaccaaacaat 13497360  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 2923718 - 2923763
Alignment:
Q  39 accaccaaaagaaagaaatcaactcttccacccaaacaatctattt 84  Q
    |||||||||||||||||||  |||||||||| |||| |||||||||    
T  2923718 accaccaaaagaaagaaatttactcttccactcaaataatctattt 2923763  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 55464170 - 55464087
Alignment:
Q  2 gcagagaagtcaggacatacttaagaaggatcaagaaaccaccaaaagaaagaaatcaactcttccacccaaacaatctatttc 85  Q
    ||||||||||||  ||| ||||||||||||||||   |||||||||||||| ||| | ||||| ||||||| ||||||||||||    
T  55464170 gcagagaagtcaatacagacttaagaaggatcaaacgaccaccaaaagaaaaaaagcgactctcccacccagacaatctatttc 55464087  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16048198 - 16048147
Alignment:
Q  1 agcagagaagtcaggacatacttaagaaggatcaagaaaccaccaaaagaaa 52  Q
    |||||||||||||||||| ||| | |||||||||||  ||||||||||||||    
T  16048198 agcagagaagtcaggacaaactcacgaaggatcaagcgaccaccaaaagaaa 16048147  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 18187997 - 18188064
Alignment:
Q  3 cagagaagtcaggacatacttaagaaggatcaagaaaccaccaaaagaaagaaatcaactcttccacc 70  Q
    |||| ||||||||| | ||||||||| |||||||  ||||||||||||||||||   |||||||||||    
T  18187997 cagaaaagtcaggataaacttaagaatgatcaagtgaccaccaaaagaaagaaagtgactcttccacc 18188064  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 32191943 - 32191986
Alignment:
Q  38 aaccaccaaaagaaagaaatcaactcttccacccaaacaatcta 81  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  32191943 aaccaccaaaagaaagaaagcaactcttccaaccagacaatcta 32191986  T

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