View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-43 (Length: 120)
Name: Solexa-NF5877-43
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-43 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 4e-57; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 4e-57
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 37798251 - 37798362
Alignment:
| Q |
8 |
aaacctttatgccgagggtattgctttaacctcagcaacatttatgctagctatgttcaaccttactccaggcattaccttcatcatggcaatattattt |
107 |
Q |
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| T |
37798251 |
aaacctttatgccgagggtattgctttaacctcagcaacatttatgctagctatgttcaaccttactccaggcattaccttcatcatggcaatattattt |
37798350 |
T |
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| Q |
108 |
gggtactcactc |
119 |
Q |
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| T |
37798351 |
gggtactcactc |
37798362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 37789467 - 37789554
Alignment:
| Q |
31 |
ctttaacctcagcaacatttatgctagctatgttcaaccttactccaggcattaccttcatcatggcaatattatttgggtactcact |
118 |
Q |
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| T |
37789467 |
ctttaacctcatcaacatttatgttcgctatgttcaaccttactccaggcattaccttcatcatggcaatattcttcgggtactcact |
37789554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 37780823 - 37780878
Alignment:
| Q |
65 |
caaccttactccaggcattaccttcatcatggcaatattatttgggtactcactct |
120 |
Q |
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| T |
37780823 |
caaccttattccaggagttaccttcatcatggccatatccttcgggtactcactct |
37780878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 37807555 - 37807618
Alignment:
| Q |
39 |
tcagcaacatttatgctagctatgttcaaccttactccaggcattaccttcatcatggcaatat |
102 |
Q |
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| T |
37807555 |
tcagcaacgtttatgttgtccatgtccaaccttattccaggaattaccttcatcatggccatat |
37807618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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