View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-44 (Length: 113)
Name: Solexa-NF5877-44
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-44 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 4e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 7995302 - 7995197
Alignment:
| Q |
8 |
gaatttgattccaaacaacaaaagaaccctttctgtaaggagttatcaatcaagccctaatgctaagaagagatttgcatcagcaagaacaagatcaagt |
107 |
Q |
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| T |
7995302 |
gaatttgattccaaacaacaaaagaacactttctgtaaggagttatcaatcaagccctaatgctaagaagagatttgcatcagcaagaacaagatcaagt |
7995203 |
T |
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| Q |
108 |
tctttt |
113 |
Q |
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|||||| |
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| T |
7995202 |
tctttt |
7995197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 8023499 - 8023604
Alignment:
| Q |
8 |
gaatttgattccaaacaacaaaagaaccctttctgtaaggagttatcaatcaagccctaatgctaagaagagatttgcatcagcaagaacaagatcaagt |
107 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8023499 |
gaatttgattccaaacaacaaaagaacactttctgtaaggagttatcaatcaagccctaatgctaagaagagatttgcatcagcaagaacaagatcaagt |
8023598 |
T |
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| Q |
108 |
tctttt |
113 |
Q |
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|||||| |
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| T |
8023599 |
tctttt |
8023604 |
T |
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