View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-45 (Length: 112)
Name: Solexa-NF5877-45
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-45 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 72; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 55977579 - 55977654
Alignment:
| Q |
37 |
actactctgacggagaggtgaatgatttccgtcgctacagccgaaactctgccggccataaagaaactttcaccaa |
112 |
Q |
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| T |
55977579 |
actactctgacggagaggtgaatgatttctgtcgctacagccgaaactctgccggccataaagaaactttcaccaa |
55977654 |
T |
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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 55977535 - 55977570
Alignment:
| Q |
8 |
tctacccggtggacacgactcgttcaaaaactactc |
43 |
Q |
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| T |
55977535 |
tctacccggtggacacgactcgttcaaaaactactc |
55977570 |
T |
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Target: chr5 (Bit Score: 47; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 14865270 - 14865328
Alignment:
| Q |
53 |
ggtgaatgatttccgtcgctacagccgaaactctgccggccataaagaaactttcacca |
111 |
Q |
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| T |
14865270 |
ggtgaacgatttccgtcgctacagccgaaactccgccggccataaagaaaccttcacca |
14865328 |
T |
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