View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-5 (Length: 190)
Name: Solexa-NF5877-5
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 38951220 - 38951403
Alignment:
| Q |
7 |
aataccatgccaaaatatccactacctgtaattggtatagtaaaaaataattacttctatgtgatcaatattgtcactaatatatgcatgcatgtaattt |
106 |
Q |
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| T |
38951220 |
aataccatgccaaaatatccactacctgtaattggtatagtaaaaaataattacttctatgtgatcaatattgtcactaatatatgcatgcatgtaattt |
38951319 |
T |
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| Q |
107 |
aggtaaagatattggaagaatatcaaagtgactgaccttggtggatgaaaatttcttgaggagcattggagtagaatggtctgc |
190 |
Q |
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| T |
38951320 |
aggtaaagatattggaagaatatcaaagtgactgaccttgttggatgaaaatttcttgaggagcattggagtagaatggtctgc |
38951403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 38943742 - 38943913
Alignment:
| Q |
7 |
aataccatgccaaaatatccactacctgtaattggtatagtaaaaaataattacttctatgtgatcaatattgtcactaatatatgcatgcatgtaattt |
106 |
Q |
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| T |
38943742 |
aataccatgccaaaatatccactacctgtaattggtatagtaaaaaatacttacttctatgtgatca---------ctaatatatgcatg----taatgt |
38943828 |
T |
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| Q |
107 |
aggtaaagatattggaagaa-tatcaaagtgactgaccttggtggatgaaaatttcttgaggagcattggagtagaatggtctgc |
190 |
Q |
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| T |
38943829 |
aggtaaagatattggaagaaatatcaaagtaactgaccttgttggatgaaaatttcttgaggagcattggagtaggatggtctgc |
38943913 |
T |
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