View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-50 (Length: 92)
Name: Solexa-NF5877-50
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-50 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 65; Significance: 4e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 2678699 - 2678627
Alignment:
| Q |
20 |
aatttgaattcaaacaaaacaatttatatgaattaaattaaaacattataaatatgagttagtgaaattaggt |
92 |
Q |
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| T |
2678699 |
aatttgaattcaaacaaaacaatttatatgaattaaattaaaacattataaatatgaggtagtgaagttaggt |
2678627 |
T |
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Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 2678730 - 2678695
Alignment:
| Q |
9 |
agacagacaaaaatttgaattcaaacaaaacaattt |
44 |
Q |
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| T |
2678730 |
agacagacaaaaatatgaattaaaacaaaacaattt |
2678695 |
T |
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