View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5877-53 (Length: 81)
Name: Solexa-NF5877-53
Description: NF5877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5877-53 |
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Alignment Details
Target: chr1 (Bit Score: 51; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-21
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 28681832 - 28681758
Alignment:
| Q |
4 |
atgaacgtagatgctctcacaattcctaaagagtgtctttgagacactcgttaacatttctcaaaaattaattag |
78 |
Q |
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| T |
28681832 |
atgaatgtaggtgctctcacaatctctaaagagtgtctttgagacactcgttagcatttctctaaaattaattag |
28681758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 45640653 - 45640700
Alignment:
| Q |
30 |
taaagagtgtctttgagacactcgttaacatttctcaaaaattaatta |
77 |
Q |
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|||||||||||| | |||||||||||||||||| ||| ||||||||| |
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| T |
45640653 |
taaagagtgtctcggggacactcgttaacatttcccaataattaatta |
45640700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 29036093 - 29036137
Alignment:
| Q |
30 |
taaagagtgtctttgagacactcgttaacatttctcaaaaattaa |
74 |
Q |
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||||||||||||||| ||| |||||| ||||||||||||||||| |
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| T |
29036093 |
taaagagtgtctttggaacattcgttagcatttctcaaaaattaa |
29036137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 36034108 - 36034143
Alignment:
| Q |
30 |
taaagagtgtctttgagacactcgttaacatttctc |
65 |
Q |
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|||| |||||||| |||||||||||||||||||||| |
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| T |
36034108 |
taaaaagtgtcttagagacactcgttaacatttctc |
36034143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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