View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5878-1 (Length: 226)
Name: Solexa-NF5878-1
Description: NF5878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5878-1 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 7369639 - 7369857
Alignment:
| Q |
8 |
aagaactggcagaggaagtttaaattaatcggtggtctgtccttcctgaacaaaaggaaaagaaacaagtatgtgagaatcatagataataaataaataa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7369639 |
aagaactggcagaggaagtttaaattaatcggtggtctgtccttcctgaacaaaaggaaaagaaacaagtatgtgagaatcatagataataaataaacaa |
7369738 |
T |
|
| Q |
108 |
catatacacaagtaaaatactaaatgttagtaatatatgtannnnnnnnattttaacaattaatatagggttaaaaatatttttaataccaataaaatta |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7369739 |
catatacacaagtaaaatactaaatgttagtaatatatgtattttttttattttaacaattaatatagggttaaaaatatttttaataccaataaaatta |
7369838 |
T |
|
| Q |
208 |
catatcgttcaagtttagt |
226 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
7369839 |
catatctttcaagtttagt |
7369857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University