View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5878-10 (Length: 133)
Name: Solexa-NF5878-10
Description: NF5878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5878-10 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 3e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 3e-61
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 6199172 - 6199046
Alignment:
| Q |
8 |
attaacaagtaaatctatgatcaagttagtttgtaactaactccatcttatccactaactacctactaatctatattatatacatcataacaaatgaata |
107 |
Q |
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| T |
6199172 |
attaacaagtaaatctatgatcaagttagtttgtaactaactccatcttatccactaactacctactaatctatattatatacatcataacaaatgaata |
6199073 |
T |
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| Q |
108 |
atagactaatg-accaacacatcttct |
133 |
Q |
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| T |
6199072 |
atagactaatgaaccaacacatcttct |
6199046 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 28428331 - 28428423
Alignment:
| Q |
10 |
taacaagtaaatc-tatgatcaagttagtttgtaactaactccatcttat-ccactaactacctactaatctatattatatacatcataacaa |
100 |
Q |
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| T |
28428331 |
taacaagtaaaccctatgatcaagttagtctctaacgaacttcatcttatacaactaactactaactaatttgtagtatatacatcataacaa |
28428423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 23398166 - 23398255
Alignment:
| Q |
10 |
taacaagtaaatc-tatgatcaagttagtttgtaactaactccatcttatcca-ctaactacctactaatctatattatatacatcataa |
97 |
Q |
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| T |
23398166 |
taacaagtaaaccctatgatctagtaagtctctaactaattccatcttaaccaactaactactcactaatttatagtatatacatcataa |
23398255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 40154661 - 40154572
Alignment:
| Q |
10 |
taacaagtaaatc-tatgatcaagttagtttgtaactaactccatcttatcc-actaactacctactaatctatattatatacatcataa |
97 |
Q |
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||||||||||||| ||| ||||||||| | | ||||||||||||| |||||| ||||||||| | | || |||| |||||||||||||| |
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| T |
40154661 |
taacaagtaaatcatataatcaagttaatctctaactaactccatattatccaactaactactaattgatatatagtatatacatcataa |
40154572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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