View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5878-2 (Length: 206)
Name: Solexa-NF5878-2
Description: NF5878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5878-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 40311370 - 40311569
Alignment:
| Q |
7 |
aatacagacatgatcaacaaaaataaattgagataaatgcagaacctatttctttctctattannnnnnnaaaattaaattgtgaagaaacaagggtgca |
106 |
Q |
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| T |
40311370 |
aatacagacatgatcaacaaaaataaattgagataaatgcagaacctatttctttctctattatttttttaaaattaaattgtgaagaagcaagggtgca |
40311469 |
T |
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| Q |
107 |
ataaaataaaattatgaacaacttatgaagaacaaaggaggaatggtgtgaaacctaaaataaaagggagtaattagaaaaattaaattacctgtctgtg |
206 |
Q |
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| T |
40311470 |
ataaaataaaactatgaacaacttatgaagaacaaaggaggaatgatgtgaaacctaaaataaaagggagtaattagaaaaattaaattacctgtctgtg |
40311569 |
T |
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