View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5878-3 (Length: 205)
Name: Solexa-NF5878-3
Description: NF5878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5878-3 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 24234464 - 24234661
Alignment:
| Q |
8 |
acaccactatgggcaccaatcctagtagcaatttgaacttacttttcatagcactcatacttggccacttggcacttttgataatacaaaatattcaagc |
107 |
Q |
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| T |
24234464 |
acaccactatgggcaccaatcctagtagcaatttgaacttatttttcatagcactcatacttggccacttggcacttttgataatacaaaatggtcaagc |
24234563 |
T |
|
| Q |
108 |
agaaattaattcctctccaaaaatattaagagtccgttaatacaagaa-tgtataaccctaattatcactcaccaaagttgttgtaaaagtcgtaata |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24234564 |
agaaattaattcctctccaaaaatattaagagtccgttaatacaagaagtgtataaccctaattatcactcaccaaagttgttgtaaaagtcgtaata |
24234661 |
T |
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