View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5878-7 (Length: 141)

Name: Solexa-NF5878-7
Description: NF5878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5878-7
Solexa-NF5878-7
[»] chr7 (34 HSPs)
chr7 (1-141)||(17904167-17904307)
chr7 (1-141)||(26770183-26770323)
chr7 (1-141)||(29427297-29427437)
chr7 (1-141)||(37179465-37179604)
chr7 (1-141)||(46467468-46467608)
chr7 (1-141)||(6387825-6387965)
chr7 (1-141)||(6389736-6389876)
chr7 (1-137)||(9876271-9876407)
chr7 (1-141)||(29890959-29891099)
chr7 (1-141)||(41921987-41922127)
chr7 (1-141)||(4405113-4405253)
chr7 (22-141)||(31503091-31503210)
chr7 (36-141)||(19523863-19523970)
chr7 (46-141)||(9332365-9332460)
chr7 (3-130)||(33974506-33974636)
chr7 (1-141)||(12252073-12252216)
chr7 (1-125)||(9215595-9215722)
chr7 (1-130)||(46689878-46690011)
chr7 (30-139)||(29722961-29723070)
chr7 (30-141)||(43701555-43701666)
chr7 (1-141)||(31858225-31858367)
chr7 (30-141)||(33379130-33379240)
chr7 (68-130)||(49011058-49011120)
chr7 (1-87)||(48049057-48049146)
chr7 (1-130)||(33915731-33915862)
chr7 (1-125)||(5514797-5514923)
chr7 (112-141)||(4405353-4405382)
chr7 (112-141)||(17904407-17904436)
chr7 (1-55)||(22753201-22753257)
chr7 (112-141)||(29723381-29723410)
chr7 (112-141)||(29890830-29890859)
chr7 (112-141)||(37179335-37179364)
chr7 (112-140)||(6387697-6387725)
chr7 (113-141)||(46467339-46467367)
[»] chr8 (22 HSPs)
chr8 (1-141)||(33837862-33838002)
chr8 (1-141)||(2508929-2509069)
chr8 (1-141)||(28378951-28379091)
chr8 (1-141)||(45334409-45334549)
chr8 (15-140)||(13469652-13469777)
chr8 (1-139)||(25106217-25106355)
chr8 (1-140)||(38495605-38495744)
chr8 (1-141)||(9739989-9740129)
chr8 (22-138)||(27793345-27793461)
chr8 (1-101)||(2626371-2626472)
chr8 (1-130)||(32183614-32183744)
chr8 (76-141)||(27024437-27024502)
chr8 (78-141)||(25978969-25979032)
chr8 (30-141)||(8235166-8235276)
chr8 (30-110)||(3203413-3203492)
chr8 (83-130)||(2626667-2626714)
chr8 (112-141)||(25106455-25106484)
chr8 (112-141)||(27027655-27027684)
chr8 (112-141)||(28379191-28379220)
chr8 (112-141)||(33837733-33837762)
chr8 (112-141)||(45334280-45334309)
chr8 (113-141)||(9740231-9740259)
[»] chr6 (13 HSPs)
chr6 (1-141)||(27312249-27312389)
chr6 (1-141)||(32274438-32274578)
chr6 (1-141)||(8504835-8504975)
chr6 (1-138)||(5003889-5004026)
chr6 (1-141)||(29452675-29452816)
chr6 (43-141)||(12174704-12174802)
chr6 (1-141)||(31171123-31171263)
chr6 (1-84)||(2543142-2543225)
chr6 (30-141)||(18741951-18742062)
chr6 (1-141)||(7156370-7156498)
chr6 (97-141)||(29302500-29302544)
chr6 (112-141)||(8504737-8504766)
chr6 (112-141)||(27312118-27312147)
[»] chr5 (24 HSPs)
chr5 (1-141)||(12399079-12399219)
chr5 (1-141)||(34208542-34208682)
chr5 (1-141)||(29874958-29875098)
chr5 (1-141)||(23090302-23090442)
chr5 (1-139)||(4145700-4145838)
chr5 (1-141)||(4695295-4695435)
chr5 (6-141)||(3077601-3077736)
chr5 (11-130)||(42757953-42758072)
chr5 (1-80)||(22646042-22646121)
chr5 (30-130)||(12096365-12096466)
chr5 (30-139)||(41610579-41610688)
chr5 (76-139)||(42793046-42793109)
chr5 (78-141)||(4434784-4434847)
chr5 (1-124)||(22528023-22528149)
chr5 (96-130)||(594328-594362)
chr5 (76-141)||(8718029-8718094)
chr5 (112-141)||(12398950-12398979)
chr5 (34-127)||(19574703-19574795)
chr5 (112-141)||(29875198-29875227)
chr5 (112-141)||(42757809-42757838)
chr5 (112-141)||(42793562-42793591)
chr5 (113-141)||(23090543-23090571)
chr5 (113-141)||(41610377-41610405)
chr5 (112-139)||(4145938-4145965)
[»] chr3 (32 HSPs)
chr3 (1-141)||(18996971-18997111)
chr3 (1-141)||(18999510-18999650)
chr3 (1-141)||(29371671-29371811)
chr3 (1-141)||(32677610-32677750)
chr3 (1-141)||(39528753-39528893)
chr3 (2-141)||(1352130-1352269)
chr3 (1-141)||(41349504-41349644)
chr3 (1-140)||(39807112-39807251)
chr3 (1-139)||(28228442-28228580)
chr3 (1-141)||(55365912-55366052)
chr3 (1-141)||(21974153-21974293)
chr3 (1-141)||(21996584-21996724)
chr3 (1-136)||(36737967-36738102)
chr3 (1-139)||(38855323-38855461)
chr3 (1-141)||(22157262-22157402)
chr3 (10-138)||(29014832-29014960)
chr3 (1-130)||(39518422-39518551)
chr3 (1-141)||(32839953-32840092)
chr3 (1-130)||(49040977-49041107)
chr3 (76-140)||(49319352-49319416)
chr3 (33-120)||(837370-837455)
chr3 (112-141)||(1352000-1352029)
chr3 (112-141)||(18997211-18997240)
chr3 (112-141)||(18999750-18999779)
chr3 (112-141)||(29014694-29014723)
chr3 (112-141)||(36737838-36737867)
chr3 (112-141)||(38855561-38855590)
chr3 (112-141)||(39518651-39518680)
chr3 (112-141)||(39528993-39529022)
chr3 (112-141)||(41349375-41349404)
chr3 (39-139)||(34667662-34667762)
chr3 (113-141)||(46878980-46879008)
[»] chr2 (15 HSPs)
chr2 (1-141)||(15233759-15233899)
chr2 (1-141)||(43040982-43041122)
chr2 (1-141)||(35793040-35793179)
chr2 (1-141)||(41252419-41252559)
chr2 (7-138)||(31296090-31296221)
chr2 (2-141)||(44104683-44104829)
chr2 (1-141)||(41642895-41643038)
chr2 (1-130)||(31903513-31903641)
chr2 (8-130)||(21727684-21727809)
chr2 (76-141)||(10118660-10118725)
chr2 (76-135)||(36963141-36963200)
chr2 (112-141)||(10112343-10112372)
chr2 (112-141)||(15233999-15234028)
chr2 (112-141)||(43040853-43040882)
chr2 (113-141)||(44104550-44104578)
[»] chr1 (26 HSPs)
chr1 (1-141)||(47669123-47669263)
chr1 (2-141)||(46220263-46220402)
chr1 (1-141)||(10737834-10737974)
chr1 (7-141)||(4817273-4817407)
chr1 (1-141)||(9831507-9831647)
chr1 (1-141)||(18126855-18126994)
chr1 (1-141)||(3384728-3384866)
chr1 (9-141)||(4055488-4055620)
chr1 (6-130)||(8889457-8889581)
chr1 (1-141)||(48564822-48564961)
chr1 (1-141)||(7414211-7414351)
chr1 (43-141)||(1236205-1236303)
chr1 (1-125)||(39241172-39241296)
chr1 (66-140)||(1749521-1749595)
chr1 (30-122)||(26842462-26842552)
chr1 (76-141)||(33020210-33020275)
chr1 (17-88)||(37875849-37875920)
chr1 (30-130)||(33846820-33846921)
chr1 (30-130)||(33947057-33947158)
chr1 (30-130)||(49112439-49112535)
chr1 (112-141)||(1236074-1236103)
chr1 (112-141)||(9831747-9831776)
chr1 (112-141)||(10737705-10737734)
chr1 (112-141)||(46220503-46220532)
chr1 (112-141)||(47669363-47669392)
chr1 (114-141)||(48565063-48565090)
[»] chr4 (17 HSPs)
chr4 (1-141)||(45590746-45590886)
chr4 (1-135)||(34334342-34334476)
chr4 (1-141)||(8955909-8956049)
chr4 (1-141)||(33288538-33288678)
chr4 (1-139)||(49162108-49162245)
chr4 (1-130)||(18835720-18835851)
chr4 (46-141)||(39481907-39482002)
chr4 (53-141)||(30469353-30469441)
chr4 (1-130)||(50774191-50774325)
chr4 (1-79)||(36971115-36971192)
chr4 (30-130)||(26025685-26025784)
chr4 (76-141)||(19256190-19256255)
chr4 (76-130)||(36968353-36968407)
chr4 (1-130)||(33109031-33109163)
chr4 (95-141)||(36016283-36016329)
chr4 (111-141)||(19257103-19257133)
chr4 (112-141)||(8955780-8955809)
[»] scaffold0103 (1 HSPs)
scaffold0103 (1-141)||(44623-44764)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 6e-72; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 6e-72
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 17904307 - 17904167
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17904307 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 17904208  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17904207 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 17904167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 26770323 - 26770183
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  26770323 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatt 26770224  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26770223 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 26770183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 29427297 - 29427437
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29427297 caaagatcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 29427396  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29427397 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 29427437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 37179465 - 37179604
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  37179465 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaactt-agaaaacaataataaattcactaaaacatcaaaagttttggaata 37179563  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37179564 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 37179604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 46467468 - 46467608
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46467468 caaaggtcgcaactactttaatagtttattgtgttttccaacaaaggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 46467567  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46467568 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 46467608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 6387825 - 6387965
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||    
T  6387825 caaatgtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgataaaacaataacaaattcactaaaacatcaaaagttttggaata 6387924  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  6387925 tagttgcagttctaaaacatcaaaagaaaaggaatggaggg 6387965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 6389876 - 6389736
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6389876 caaatgtcacaactactttaatagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 6389777  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||| |||| ||||||||||    
T  6389776 tagttgaagttctaaaacatcaaaacaaaatgaatggaggg 6389736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 9876407 - 9876271
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9876407 caaaggtcacaactactttaatagtttatggtgttttccaacaagggtaaaattgagaaaacaataataaattcactaaaacatcaaaagttttggaata 9876308  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatgg 137  Q
    ||||||||||| |||||||||||||||||||||||||    
T  9876307 tagttgaagttttaaaacatcaaaagaaaaggaatgg 9876271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 29890959 - 29891099
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||    
T  29890959 caaaagtcacaactactttaatagtttattgtgttttccatcaaggataaacttgagaaaacaatcataaattcactaaaacatcaaaaattttggaata 29891058  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  29891059 tagttgaagttttaaaacatcaaaagaaaaggaatggaggg 29891099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 41921987 - 41922127
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||||||  |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  41921987 caaaggttgcaactactttaatagtttattgtgtttttcaacaagggtaaacttgataaaacaatattaaattcactaaaacatcaaaagttttggaata 41922086  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  41922087 tagttgaagttctaaaacatcaaaagaaaagaaatagaggg 41922127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 4405253 - 4405113
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  4405253 caaaggtcacaactactttaataatttatggtgttttccaacaaggataaaattgagaaaacaataataaattcactaaaacatcaaatgttttagaata 4405154  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  4405153 tagttgaagttttaaaacatcaaaagaaaagaaatggaggg 4405113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 31503091 - 31503210
Alignment:
Q  22 tagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatc 121  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31503091 tagtttatagtgttttccaacaagggtaaacttaagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttctaaaacatc 31503190  T
Q  122 aaaagaaaaggaatggaggg 141  Q
    ||||||||||||| ||||||    
T  31503191 aaaagaaaaggaacggaggg 31503210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 19523863 - 19523970
Alignment:
Q  36 ttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatca--aaagaaaagga 133  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||  ||| |||||||    
T  19523863 ttccaacaagggtaaacttgataaaacaataataaattcactaaaacatcaaaaattttggaatatagttgaagttctaaaacatcaacaaaaaaaagga 19523962  T
Q  134 atggaggg 141  Q
    || |||||    
T  19523963 atagaggg 19523970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 9332460 - 9332365
Alignment:
Q  46 ggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||    
T  9332460 ggtaaacctgagaaaacaataataaattcactaaaacatcaaaagttttgaaatatagttgaagttctaaaacatcaaaagaaaaaaaatggaggg 9332365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 33974636 - 33974506
Alignment:
Q  3 aaggtcacaactactttaatagttt-at--tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaat 99  Q
    |||||||||||| |||||||||||| ||  |||||||| ||||||||||||||||| ||||| |||| ||||| ||||||||||| |||  |||||||||    
T  33974636 aaggtcacaactcctttaatagttttatggtgtgtttttcaacaagggtaaacttgggaaaaaaatattaaatatactaaaacataaaatattttggaat 33974537  T
Q  100 atagttgaagttctaaaacatcaaaagaaaa 130  Q
    ||||||||||||| |||||||||||||||||    
T  33974536 atagttgaagttcgaaaacatcaaaagaaaa 33974506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 12252216 - 12252073
Alignment:
Q  1 caaaggtcacaactactttaatagttt-at--tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttgga 97  Q
    |||| |||| |||| |||||||||||| ||  |||||||| |||| || ||||||||| |||||||| | ||||| || || |||||||||  |||||||    
T  12252216 caaaagtcataactcctttaatagttttatggtgtgtttttcaactagagtaaacttgggaaaacaagattaaatatattagaacatcaaatattttgga 12252117  T
Q  98 atatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  12252116 atatagttgaagttctaaaacatcaaaagaaaaaaaatggaggg 12252073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 9215595 - 9215722
Alignment:
Q  1 caaaggtcacaactactttaatagttt-attgtgt--tttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttgga 97  Q
    |||||||||||||| |||||||| ||| || ||||  ||| ||||||||||||| |||| |||| |||| || || ||||||||||| |||  |||||||    
T  9215595 caaaggtcacaactcctttaataattttatggtgtctttttcaacaagggtaaatttgaaaaaaaaatattacatatactaaaacattaaatattttgga 9215694  T
Q  98 atatagttgaagttctaaaacatcaaaa 125  Q
    ||||||||||||||||||||||||||||    
T  9215695 atatagttgaagttctaaaacatcaaaa 9215722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 46690011 - 46689878
Alignment:
Q  1 caaaggtcacaactactttaatagttt-attgtgt---tttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttgg 96  Q
    |||| ||||||||| |||||||||||| || ||||   ||| ||| ||||||||||||| ||||| |||| |||   ||||||||||||||   ||||||    
T  46690011 caaatgtcacaacttctttaatagttttatcgtgtgttttttcaaaaagggtaaacttgggaaaaaaatattaaccatactaaaacatcaagtattttgg 46689912  T
Q  97 aatatagttgaagttctaaaacatcaaaagaaaa 130  Q
    ||||||||||||||||||||||||||||||||||    
T  46689911 aatatagttgaagttctaaaacatcaaaagaaaa 46689878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 29723070 - 29722961
Alignment:
Q  30 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 129  Q
    |||||||| ||||||||||||| |||   ||| | |||||||  |  |||||||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  29723070 tgtgtttttcaacaagggtaaaattggataaaaagtaataaaaattataaaacatcaaaagttttggaataaagtttaagttctaaaatatcaaaagaaa 29722971  T
Q  130 aggaatggag 139  Q
    ||||||||||    
T  29722970 aggaatggag 29722961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 43701666 - 43701555
Alignment:
Q  30 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 129  Q
    |||||||| ||||||||||||| |||   ||| |||| ||||  | |||||||||||||  |||||||||  |||| |||||||||||||||||||||||    
T  43701666 tgtgtttttcaacaagggtaaaattggataaaaaatattaaaaattctaaaacatcaaattttttggaatgaagtttaagttctaaaacatcaaaagaaa 43701567  T
Q  130 aggaatggaggg 141  Q
    ||||||||||||    
T  43701566 aggaatggaggg 43701555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 31858225 - 31858367
Alignment:
Q  1 caaaggtcacaactactttaatagttt-at--tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttgga 97  Q
    ||||||||||||||  ||||||| ||| ||  |||||||| |||| |||||||| ||| ||||| || | ||||| |||||||||||||||  ||||  |    
T  31858225 caaaggtcacaactcatttaatacttttatgatgtgtttttcaacgagggtaaatttgggaaaaaaa-attaaatatactaaaacatcaaatattttaaa 31858323  T
Q  98 atatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||| ||||||||||||||||||  |||||||||    
T  31858324 atatagttgaagttgtaaaacatcaaaagaaaaaaaatggaggg 31858367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 33379130 - 33379240
Alignment:
Q  30 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 129  Q
    |||||||| ||||||||||||| ||| || || |||| ||||  | |||||||||||||  ||||| |||  ||||||||||||||||||||||||||||    
T  33379130 tgtgtttttcaacaagggtaaaattg-gataaaaatattaaaaatcctaaaacatcaaatattttgaaatcaagttgaagttctaaaacatcaaaagaaa 33379228  T
Q  130 aggaatggaggg 141  Q
    || |||||||||    
T  33379229 agaaatggaggg 33379240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 49011058 - 49011120
Alignment:
Q  68 taaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 130  Q
    ||||| ||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||    
T  49011058 taaatatactaaaacatcaaatgttttgaaatatagttgaagtcctaaaacatcaaaagaaaa 49011120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 48049146 - 48049057
Alignment:
Q  1 caaaggtcacaactactttaatagttt---attgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaa 87  Q
    |||||||||||||| ||||||||||||   | |||||||| ||||| ||||||||||| ||||| |||| ||||| ||||||||||||||    
T  48049146 caaaggtcacaactcctttaatagttttctagtgtgtttttcaacaggggtaaacttgggaaaaaaatattaaatatactaaaacatcaa 48049057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 33915862 - 33915731
Alignment:
Q  1 caaaggtcacaactactttaatagttt-at--tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttgga 97  Q
    |||||||||||||   ||||||||||| ||  |||||||| |||||||| |||||||| ||||| || | ||||| |||||||||||||||  ||||| |    
T  33915862 caaaggtcacaacctatttaatagttttatggtgtgtttttcaacaagg-taaacttgggaaaaaaaaattaaatatactaaaacatcaaatattttgaa 33915764  T
Q  98 atatagttgaagttctaaaacatcaaaagaaaa 130  Q
    |||||||| || ||| |||||| ||||||||||    
T  33915763 atatagttaaaattcaaaaacaacaaaagaaaa 33915731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 5514923 - 5514797
Alignment:
Q  1 caaaggtcacaactactttaatagttt---attgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttgga 97  Q
    ||||||||||||||  |||||||||||   | ||||||||  ||||||||||||||||| || | |||| ||||| |||||||  ||||||  |||| ||    
T  5514923 caaaggtcacaactcttttaatagttttatagtgtgttttttaacaagggtaaacttgaaaata-aatattaaatatactaaataatcaaatattttaga 5514825  T
Q  98 atatagttgaagttctaaaacatcaaaa 125  Q
    ||||| || |||||||||||||| ||||    
T  5514824 atatatttaaagttctaaaacattaaaa 5514797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 4405353 - 4405382
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  4405353 ctaaaacatcaaaagaaaaggaatggaggg 4405382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 17904407 - 17904436
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  17904407 ctaaaacatcaaaagaaaaggaatggaggg 17904436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 22753201 - 22753257
Alignment:
Q  1 caaaggtcacaactactttaatagtttat--tgtgttttccaacaagggtaaacttg 55  Q
    ||||||||||||||  |||||||||||||  | |||||||||||||| |||||||||    
T  22753201 caaaggtcacaacttttttaatagtttatagtttgttttccaacaagcgtaaacttg 22753257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 29723381 - 29723410
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  29723381 ctaaaacatcaaaagaaaaggaatggaggg 29723410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 29890859 - 29890830
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  29890859 ctaaaacatcaaaagaaaaggaatggaggg 29890830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 37179364 - 37179335
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  37179364 ctaaaacatcaaaagaaaaggaatggaggg 37179335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 140
Target Start/End: Complemental strand, 6387725 - 6387697
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggagg 140  Q
    |||||||||||||||||||||||||||||    
T  6387725 ctaaaacatcaaaagaaaaggaatggagg 6387697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 141
Target Start/End: Complemental strand, 46467367 - 46467339
Alignment:
Q  113 taaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||    
T  46467367 taaaacatcaaaagaaaaggaatggaggg 46467339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 2e-69; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 33837862 - 33838002
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  33837862 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaata 33837961  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33837962 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 33838002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 2508929 - 2509069
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  2508929 caaaggtcacaactactttaatagtttactgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaata 2509028  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2509029 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 2509069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 28379091 - 28378951
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28379091 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 28378992  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  28378991 tagttgaagttctaaaacatcaaaagaaaaataatggaggg 28378951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 125; E-Value: 9e-65
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 45334409 - 45334549
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||    
T  45334409 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgaaaaaacaataacaaattcactaaaacatcaaaagttttggaata 45334508  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  45334509 tagttaaagttctaaaacatcaaaagaaaaggaatggaggg 45334549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 13469652 - 13469777
Alignment:
Q  15 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13469652 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaattataaatttactaaaatatcaaaagttttggaatatagttgaagttcta 13469751  T
Q  115 aaacatcaaaagaaaaggaatggagg 140  Q
    ||||||||||||||||||||||||||    
T  13469752 aaacatcaaaagaaaaggaatggagg 13469777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 115; E-Value: 9e-59
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 25106355 - 25106217
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||    
T  25106355 caaaagtcacaactactttaatagtttattgtgttttccatcaagggtaaacttgaaaaaacaatcataaattcactaaaacatcaaaaattttggaata 25106256  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggag 139  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25106255 tagttgaagttctaaaacatcaaaagaaaaggaatggag 25106217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 38495605 - 38495744
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||    
T  38495605 caaatgtcataactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcaccaaaacatcaaaaattttagaata 38495704  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggagg 140  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  38495705 tagttgaagttctaaaacatcacaagaaaaagaatggagg 38495744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 9740129 - 9739989
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| | ||||||||||||||||||| ||||    
T  9740129 caaatgtcacaactactttaatagtttattgtgtttttcaacaaggataaacttgagaaagcaataataaattcagtaaaacatcaaaagttttgaaata 9740030  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||  |||||||||||||||||||||||||||||||||||||    
T  9740029 tacatgaagttctaaaacatcaaaagaaaaggaatggaggg 9739989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 27793345 - 27793461
Alignment:
Q  22 tagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatc 121  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||    
T  27793345 tagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaacattaaaagttttggaatatagttgaagatctaaaacatc 27793444  T
Q  122 aaaagaaaaggaatgga 138  Q
    ||||||||| |||||||    
T  27793445 aaaagaaaatgaatgga 27793461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 2626371 - 2626472
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaac-aataataaatttactaaaacatcaaaagttttggaat 99  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  2626371 caaaggtcacaattactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaaataataaattcactaaaacatcaaaagttttggaat 2626470  T
Q  100 at 101  Q
    ||    
T  2626471 at 2626472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 32183614 - 32183744
Alignment:
Q  1 caaaggtcacaactactttaatagtttat--tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaa 98  Q
    |||||||| ||||| ||| ||||||||||  |||||||||||||||||||||||||| ||||| |||| ||||| |||||||||||||||  ||||||||    
T  32183614 caaaggtcgcaactcctt-aatagtttatggtgtgttttccaacaagggtaaacttgggaaaaaaatattaaatatactaaaacatcaaatattttggaa 32183712  T
Q  99 tatagttgaagttctaaaacatcaaaagaaaa 130  Q
    ||||||||||||||||||||||||||||||||    
T  32183713 tatagttgaagttctaaaacatcaaaagaaaa 32183744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 27024502 - 27024437
Alignment:
Q  76 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||    
T  27024502 ctaaaacatcaaaagttttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggaggg 27024437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 25978969 - 25979032
Alignment:
Q  78 aaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||| |||||| |||| ||||||||| |||||||||||||||||||| |||||||||    
T  25978969 aaaacatcaaatgttttgaaataaagttgaagtcctaaaacatcaaaagaaaagaaatggaggg 25979032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 8235276 - 8235166
Alignment:
Q  30 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 129  Q
    |||||||| ||||||||||||| ||||  ||| |||| ||||  |  |||||||||||| |||||| |||| | ||||||| ||||||||||||||||||    
T  8235276 tgtgtttttcaacaagggtaaaattgaagaaa-aatattaaaaatcttaaaacatcaaatgttttgaaataaaattgaagtcctaaaacatcaaaagaaa 8235178  T
Q  130 aggaatggaggg 141  Q
    |  |||||||||    
T  8235177 ataaatggaggg 8235166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 3203413 - 3203492
Alignment:
Q  30 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagt 110  Q
    |||||||| |||||| | |||||||||||||| |||| ||||| |||||||||||||||  ||||  ||||||||||||||    
T  3203413 tgtgtttttcaacaaagataaacttgagaaaa-aatattaaatatactaaaacatcaaatattttaaaatatagttgaagt 3203492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 2626667 - 2626714
Alignment:
Q  83 atcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 130  Q
    ||||||||||||||||||||||||||||||||||| || |||| ||||    
T  2626667 atcaaaagttttggaatatagttgaagttctaaaatataaaaaaaaaa 2626714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 25106455 - 25106484
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  25106455 ctaaaacatcaaaagaaaaggaatggaggg 25106484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 27027655 - 27027684
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  27027655 ctaaaacatcaaaagaaaaggaatggaggg 27027684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 28379191 - 28379220
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  28379191 ctaaaacatcaaaagaaaaggaatggaggg 28379220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 33837762 - 33837733
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  33837762 ctaaaacatcaaaagaaaaggaatggaggg 33837733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 45334309 - 45334280
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  45334309 ctaaaacatcaaaagaaaaggaatggaggg 45334280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 141
Target Start/End: Original strand, 9740231 - 9740259
Alignment:
Q  113 taaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||    
T  9740231 taaaacatcaaaagaaaaggaatggaggg 9740259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 2e-69; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 27312249 - 27312389
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  27312249 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaatgttttggaata 27312348  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27312349 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 27312389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 32274578 - 32274438
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  32274578 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaata 32274479  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32274478 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 32274438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 8504835 - 8504975
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| ||||    
T  8504835 caaaggtcacaactactttaatagtttattgtgtttttcaacaagggtaaacctgagaaaataataataaattcactaaaacatcaaaagttttgaaata 8504934  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  8504935 tagttgaagttctaaaacatcaaaagaaaatgaatggaggg 8504975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 5004026 - 5003889
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  5004026 caaatgtcaaaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttgaaata 5003927  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatgga 138  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  5003926 tagttgaagttctaaaacatcaaaaaaaaatgaatgga 5003889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 29452675 - 29452816
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaa-taataaatttactaaaacatcaaaagttttggaat 99  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| |  ||| ||||    
T  29452675 caaaggtcacaactattttaatagtttatggtgttttccaacaagtgtaaacttgagaaaacaagtaataaattcactaaaacatcaagaaatttagaat 29452774  T
Q  100 atagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  29452775 atagttgaagttctaaaacatcagaagaaaagaaatggaggg 29452816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 12174802 - 12174704
Alignment:
Q  43 aagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  12174802 aagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatatttaaagttctaaaacattaaaagaaaaggaatggaggg 12174704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 31171123 - 31171263
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||| ||||||||||||  ||||||||||| || | |||||||||||||||||||||||||| |||| |||||| || |||||||||||    
T  31171123 caaaggtcacaactattttaatagtttaaggtgttttccaataaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 31171222  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
     | ||||| ||||||| |||||||||||||| |||||||||    
T  31171223 catttgaatttctaaatcatcaaaagaaaagaaatggaggg 31171263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2543225 - 2543142
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacat 84  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  2543225 caaatgtcacaactactttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacat 2543142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 18742062 - 18741951
Alignment:
Q  30 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 129  Q
    |||||||| ||||||||||||| ||||||| |||||| ||||| ||||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||    
T  18742062 tgtgtttttcaacaagggtaaatttgagaatacaatattaaatatactaaaacatcaaatgttttgaaataaagttgaagtcctaaaacatcaaaagaaa 18741963  T
Q  130 aggaatggaggg 141  Q
    || |||||||||    
T  18741962 agaaatggaggg 18741951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 7156370 - 7156498
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| ||||||| |||||||||||||||| |||||||||||||||            |||||||||||||||| ||||||||||| ||||||||||||||    
T  7156370 caaatgtcacaattactttaatagtttatggtgttttccaacaag------------aaaacaataataaattcactaaaacatctaaagttttggaata 7156457  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||   ||||||||||||||||||||| |||||||||    
T  7156458 tagttgattgtctaaaacatcaaaagaaaagaaatggaggg 7156498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 29302500 - 29302544
Alignment:
Q  97 aatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29302500 aatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 29302544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 8504766 - 8504737
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  8504766 ctaaaacatcaaaagaaaaggaatggaggg 8504737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 27312147 - 27312118
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  27312147 ctaaaacatcaaaagaaaaggaatggaggg 27312118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 12399079 - 12399219
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  12399079 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaata 12399178  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12399179 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 12399219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 34208682 - 34208542
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  34208682 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaata 34208583  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34208582 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 34208542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 29875098 - 29874958
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  29875098 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaatgttttggaata 29874999  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  29874998 tagttgaagttctaaaacatcaaaagaaaaagaatggaggg 29874958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 125; E-Value: 9e-65
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 23090442 - 23090302
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||    
T  23090442 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaaattttggaata 23090343  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
     ||||||||||||||||||||||||||||||||||||||||    
T  23090342 cagttgaagttctaaaacatcaaaagaaaaggaatggaggg 23090302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 4145838 - 4145700
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||    
T  4145838 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttaagaaaacaataacaaattcactaaaacatcaaaagttttggaata 4145739  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggag 139  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  4145738 tagttaaagttctaaaacatcaaaagaaaaggaatggag 4145700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 4695295 - 4695435
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  4695295 caaatgtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttgaaata 4695394  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  4695395 tagttgaagttctaaaaaatcaaaagaaaaggaatgaaggg 4695435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 3077736 - 3077601
Alignment:
Q  6 gtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagtt 105  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||  |||||||||    
T  3077736 gtcacaactactttaatagtttattgtgttttccaacaaggataaacttgagaaaacaataacaaattcactaaaacatcaaaagttttaaaatatagtt 3077637  T
Q  106 gaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||| ||||||||||||||||||||| ||||||||||    
T  3077636 gaaattctaaaacatcaaaagaaaatgaatggaggg 3077601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 5e-45
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 42757953 - 42758072
Alignment:
Q  11 aactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagt 110  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||    
T  42757953 aactactttaatagtttatcgtgttttccaacaaggataaacttgagaaaacaataataaattcactaaaacatcaaaagttttgaaaaatagttgaagt 42758052  T
Q  111 tctaaaacatcaaaagaaaa 130  Q
    |||||||||| |||| ||||    
T  42758053 tctaaaacataaaaaaaaaa 42758072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 22646042 - 22646121
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaa 80  Q
    |||| |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||    
T  22646042 caaaagtcacaactactttaatagtttatggtgtttttcaacaaggttaaacttgagaaaacaataataaattcactaaa 22646121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 12096365 - 12096466
Alignment:
Q  30 tgtgttttccaacaagggtaaacttgagaaaacaataataaatt-tactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaa 128  Q
    |||||||| ||||||| ||| ||||||||||| |||| |||| | || |||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  12096365 tgtgtttttcaacaagagtacacttgagaaaagaatattaaaatatattaaaacatcaaatgttttggaatatagttgaagtcctaaaacatcaaaagaa 12096464  T
Q  129 aa 130  Q
    ||    
T  12096465 aa 12096466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 41610579 - 41610688
Alignment:
Q  30 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 129  Q
    ||||||||  |||||||||||| |||   ||| | || |||| || ||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  41610579 tgtgttttttaacaagggtaaaattggataaaaagtattaaaatttctaaaacatcaaaagttttggaataaagtttaagttctaaaacatcaaaagaaa 41610678  T
Q  130 aggaatggag 139  Q
    || |||||||    
T  41610679 agaaatggag 41610688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 42793109 - 42793046
Alignment:
Q  76 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggag 139  Q
    ||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  42793109 ctaaaacatcaaaagttttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggag 42793046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 4434847 - 4434784
Alignment:
Q  78 aaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||  | ||| |||| ||||||||| |||||||||||||||||||| |||||||||    
T  4434847 aaaacatcaaatatcttgaaataaagttgaagtcctaaaacatcaaaagaaaagaaatggaggg 4434784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 22528149 - 22528023
Alignment:
Q  1 caaaggtcacaactactttaatagttt-at--tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttgga 97  Q
    ||||||||||||||  ||||||||||| ||  |||||||| |||||| |||||| |||  | || | || ||||| |||||||||||||||  |||||||    
T  22528149 caaaggtcacaactcttttaatagttttatggtgtgtttttcaacaaaggtaaatttggaataaaattattaaatgtactaaaacatcaaatattttgga 22528050  T
Q  98 atatagttgaagttctaaaacatcaaa 124  Q
     |||| ||||||| |||||| ||||||    
T  22528049 gtataattgaagtcctaaaatatcaaa 22528023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 594328 - 594362
Alignment:
Q  96 gaatatagttgaagttctaaaacatcaaaagaaaa 130  Q
    |||||||||||||||| ||||||||||||||||||    
T  594328 gaatatagttgaagttttaaaacatcaaaagaaaa 594362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 8718094 - 8718029
Alignment:
Q  76 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||  ||||| |||| ||||||| |  ||||| ||||||||||||| |||||||||    
T  8718094 ctaaaacatcaaatattttgaaataaagttgaaatcttaaaatatcaaaagaaaagaaatggaggg 8718029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 12398979 - 12398950
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  12398979 ctaaaacatcaaaagaaaaggaatggaggg 12398950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 19574795 - 19574703
Alignment:
Q  34 ttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaaga 127  Q
    |||| |||||||||| | |||| ||||| |||| ||||| || |||||||| |||  ||||| ||| || ||||||| ||||||||||||||||    
T  19574795 tttttcaacaagggtgaccttgggaaaa-aatattaaatatattaaaacattaaatattttgaaatttaattgaagtcctaaaacatcaaaaga 19574703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 29875198 - 29875227
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  29875198 ctaaaacatcaaaagaaaaggaatggaggg 29875227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 42757838 - 42757809
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  42757838 ctaaaacatcaaaagaaaaggaatggaggg 42757809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 42793562 - 42793591
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  42793562 ctaaaacatcaaaagaaaaggaatggaggg 42793591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 141
Target Start/End: Original strand, 23090543 - 23090571
Alignment:
Q  113 taaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||    
T  23090543 taaaacatcaaaagaaaaggaatggaggg 23090571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 141
Target Start/End: Complemental strand, 41610405 - 41610377
Alignment:
Q  113 taaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||    
T  41610405 taaaacatcaaaagaaaaggaatggaggg 41610377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 139
Target Start/End: Original strand, 4145938 - 4145965
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggag 139  Q
    ||||||||||||||||||||||||||||    
T  4145938 ctaaaacatcaaaagaaaaggaatggag 4145965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 2e-69; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 18997111 - 18996971
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18997111 caaaagtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 18997012  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18997011 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 18996971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 18999650 - 18999510
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18999650 caaaagtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 18999551  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18999550 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 18999510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 29371671 - 29371811
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29371671 caaaggtcacaagtactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 29371770  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29371771 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 29371811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 32677610 - 32677750
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  32677610 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggtata 32677709  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32677710 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 32677750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 39528893 - 39528753
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  39528893 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaata 39528794  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39528793 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 39528753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 132; E-Value: 6e-69
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 1352130 - 1352269
Alignment:
Q  2 aaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatat 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  1352130 aaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatat 1352229  T
Q  102 agttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1352230 agttgaagttctaaaacatcaaaagaaaaggaatggaggg 1352269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 41349504 - 41349644
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  41349504 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttagaata 41349603  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41349604 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 41349644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 124; E-Value: 4e-64
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 39807112 - 39807251
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  39807112 caaaggtcacaactactttaatagtttattgtgttttccaacgagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttgtaata 39807211  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggagg 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39807212 tagttgaagttctaaaacatcaaaagaaaaggaatggagg 39807251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 28228580 - 28228442
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28228580 caaatgtcacagctactttaatagtttattgtattttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 28228481  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggag 139  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28228480 tagttgaagttctaaaacatcaaaagaaaaggaatggag 28228442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 55366052 - 55365912
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  |||| ||||    
T  55366052 caaaggtcacaactactttaatagtttattgtgttttctaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaaaatttgaaata 55365953  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  55365952 tagttgaagttctaaaacatcaaaagaaaaggaatgaaggg 55365912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 21974293 - 21974153
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  21974293 caaaggtcacaactactttaatattttatggtgttttccaacaaaggtaaacctgagaaaacaataataaattcactaaaacatcaaaagttttggaata 21974194  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  21974193 tagttgaaattctaaaacatcaaaagaaaagaaatggaggg 21974153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 21996724 - 21996584
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  21996724 caaaggtcacaactactttaatattttatggtgttttccaacaaaggtaaacctgagaaaacaataataaattcactaaaacatcaaaagttttggaata 21996625  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  21996624 tagttgaaattctaaaacatcaaaagaaaagaaatggaggg 21996584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 36737967 - 36738102
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||  ||||    
T  36737967 caaatgtcacaactactttaatagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttaaaata 36738066  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatg 136  Q
    ||||| ||||||||||||||||||||||||||||||    
T  36738067 tagttaaagttctaaaacatcaaaagaaaaggaatg 36738102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 38855461 - 38855323
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38855461 caaaggtcacaactactttaatagtttatggtgtttttcaacaaggataaaattgagaaaacaataataaattcactaaaacatcaaaagttttggaata 38855362  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggag 139  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  38855361 tagttgatgttttaaaacatcaaaagaaaaggaatggag 38855323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 22157402 - 22157262
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||||||| |||||    
T  22157402 caaaggtcacaactactttaatattttatggtgttttccaacaaaggtaaacctgagaaaacaataataaattcactaaaatatcaaaagttttagaata 22157303  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  22157302 tagttgaagttctaaaacatcaaaagaaaagaaatggaggg 22157262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 29014832 - 29014960
Alignment:
Q  10 caactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaag 109  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29014832 caactactttaatagtttaatgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaag 29014931  T
Q  110 ttctaaaacatcaaaagaaaaggaatgga 138  Q
    ||||||||||| |||| |||| |||||||    
T  29014932 ttctaaaacataaaaaaaaaaagaatgga 29014960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 39518551 - 39518422
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||    
T  39518551 caaatgtcataactactttaatagtttattgtgttttccaacaaggataaacttgagaaaacaataataaattcactaaaatatcaaaagttttgaaata 39518452  T
Q  101 tagttgaagttctaaaacatcaaaagaaaa 130  Q
    ||||||||||| ||||||||||||| ||||    
T  39518451 tagttgaagttttaaaacatcaaaaaaaaa 39518422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 32840092 - 32839953
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| |||||||||| |||||||||||||||||||||| |||||||  |||||| |||||| |||||| |||| |||||||||||||||  |||  ||||    
T  32840092 caaatgtcacaactattttaatagtttattgtgttttctaacaaggacaaacttaagaaaataataat-aattcactaaaacatcaaaaaatttaaaata 32839994  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||| || ||||||||| ||||||||||    
T  32839993 tagttgaagttctaaaatataaaaagaaaatgaatggaggg 32839953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 49040977 - 49041107
Alignment:
Q  1 caaaggtcacaactactttaatagtttattg---tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttgga 97  Q
    |||||||| ||||| ||||||||||||  ||   |||||| |||||||||||||| || |||||  ||| ||||| |||||||||||||||  |||||||    
T  49040977 caaaggtcccaactcctttaatagttttatggtttgtttttcaacaagggtaaacgtgggaaaa--atattaaatatactaaaacatcaaatattttgga 49041074  T
Q  98 atatagttgaagttctaaaacatcaaaagaaaa 130  Q
    | |||||||||||||||||||||||||||||||    
T  49041075 acatagttgaagttctaaaacatcaaaagaaaa 49041107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 49319416 - 49319352
Alignment:
Q  76 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagg 140  Q
    |||||||||||||| |||| ||||  |||| ||||||||||||||||||||||||||||||||||    
T  49319416 ctaaaacatcaaaatttttagaatgaagtttaagttctaaaacatcaaaagaaaaggaatggagg 49319352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 837455 - 837370
Alignment:
Q  33 gttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacat 120  Q
    ||||| |||||  ||||||||||| |||| |||| ||| | |||||||| ||||||| |||| |||| ||||||||||||||||||||    
T  837455 gtttttcaacacaggtaaacttgaaaaaa-aatattaattatactaaaatatcaaaa-ttttagaatttagttgaagttctaaaacat 837370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 1352029 - 1352000
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  1352029 ctaaaacatcaaaagaaaaggaatggaggg 1352000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 18997211 - 18997240
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  18997211 ctaaaacatcaaaagaaaaggaatggaggg 18997240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 18999750 - 18999779
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  18999750 ctaaaacatcaaaagaaaaggaatggaggg 18999779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 29014723 - 29014694
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  29014723 ctaaaacatcaaaagaaaaggaatggaggg 29014694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 36737867 - 36737838
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  36737867 ctaaaacatcaaaagaaaaggaatggaggg 36737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 38855561 - 38855590
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  38855561 ctaaaacatcaaaagaaaaggaatggaggg 38855590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 39518651 - 39518680
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  39518651 ctaaaacatcaaaagaaaaggaatggaggg 39518680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 39528993 - 39529022
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  39528993 ctaaaacatcaaaagaaaaggaatggaggg 39529022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 41349404 - 41349375
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  41349404 ctaaaacatcaaaagaaaaggaatggaggg 41349375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 34667662 - 34667762
Alignment:
Q  39 caacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatgga 138  Q
    ||||||||||||| ||||  ||| ||||  |||  | |||||| ||||||  ||||| | || ||||||||| |||||||||||||||||| | ||||||    
T  34667662 caacaagggtaaaattgaataaaaaatatcaaacattctaaaagatcaaatattttgaattaaagttgaagtcctaaaacatcaaaagaaacgaaatgga 34667761  T
Q  139 g 139  Q
    |    
T  34667762 g 34667762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 141
Target Start/End: Original strand, 46878980 - 46879008
Alignment:
Q  113 taaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||    
T  46878980 taaaacatcaaaagaaaaggaatggaggg 46879008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 4e-67; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 15233899 - 15233759
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  15233899 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaata 15233800  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  15233799 tagttgaagttctaaaacatcaaaagaaaaggaatagaggg 15233759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 9e-65
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 43040982 - 43041122
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43040982 caaaggtcacaactactttaatagtttatggtgttttccaacaagggtaaaattgagaaaacaataataaattcactaaaacatcaaaagttttggaata 43041081  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  43041082 tagttgaagttttaaaacatcaaaagaaaaggaatggaggg 43041122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 35793040 - 35793179
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  35793040 caaatgtcacaactactttaatagtttattgtgttttccaacaagggtaaacttga-aaaacaataataaattctctaaaacatcaaaagttttggaata 35793138  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  35793139 tagttgaagttctaaaacatcaaaagaaaaagaatggaggg 35793179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 41252559 - 41252419
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  41252559 caaatgtcacaactactttaatagtttattgtattttccaacaaggataaacttgagaacacaataataaattcactaaaacatcaaaagttttggaata 41252460  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    || ||||||||||||||||| ||||||||||||||||||||    
T  41252459 tatttgaagttctaaaacataaaaagaaaaggaatggaggg 41252419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 31296221 - 31296090
Alignment:
Q  7 tcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttg 106  Q
    ||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  31296221 tcacaactactttaatagtttattgtgtttttcaacaaaggtaaatttgagaaaacaataataaattcactaaaacatcaaaagttttagaatatagttg 31296122  T
Q  107 aagttctaaaacatcaaaagaaaaggaatgga 138  Q
    |||||||||||||||||||||||| |||||||    
T  31296121 aagttctaaaacatcaaaagaaaaagaatgga 31296090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 44104683 - 44104829
Alignment:
Q  2 aaaggtcacaactactttaatagtttattgtgttttccaacaa-------gggtaaacttgagaaaacaataataaatttactaaaacatcaaaagtttt 94  Q
    ||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  44104683 aaaggtcacaactaccttaatagtttattgtgttttccaacaatttataagggtaaacttgagaaaataataataaattcactaaaacatcaaaagtttt 44104782  T
Q  95 ggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||    
T  44104783 gaaatatagttgaagttctaaaacatcaaaagaaaaggaacggaggg 44104829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 41643038 - 41642895
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaa-- 98  Q
    ||||||||||||||||||||||||||||| ||||||||||  || |||||||||||||||||||||||||||| ||||||||||||||||||||||||      
T  41643038 caaaggtcacaactactttaatagtttatggtgttttccagaaaaggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 41642939  T
Q  99 tatagttgaagttct-aaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||| |||| |||||||||||||||||| |||||||||    
T  41642938 tatagttgaaattctaaaaacatcaaaagaaaagaaatggaggg 41642895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 31903513 - 31903641
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||  |||||||||    
T  31903513 caaaggtcacaactactttaatagtttatggtgttttccaataagggtaaact-gataaaacaataataaatttactaaaacatcaaaaaatttggaata 31903611  T
Q  101 tagttgaagttctaaaacatcaaaagaaaa 130  Q
    || |||||||||||||||||||||| ||||    
T  31903612 tatttgaagttctaaaacatcaaaaaaaaa 31903641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 21727809 - 21727684
Alignment:
Q  8 cacaactactttaatagttt-attgtgttttc--caacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagt 104  Q
    ||||||| |||||||||||| ||||||||||   ||||||||||||| ||| | ||| |||| ||  | ||| |||||||||||  ||||| ||||||||    
T  21727809 cacaactcctttaatagttttattgtgtttttttcaacaagggtaaatttggggaaaaaatattagttataccaaaacatcaaatattttgaaatatagt 21727710  T
Q  105 tgaagttctaaaacatcaaaagaaaa 130  Q
    ||||||||||||||||||||||||||    
T  21727709 tgaagttctaaaacatcaaaagaaaa 21727684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 10118660 - 10118725
Alignment:
Q  76 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||    
T  10118660 ctaaaacatcaaaagttttggaataaagtttaagctctaaaatatcaaaagaaaaggaatggaggg 10118725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 36963200 - 36963141
Alignment:
Q  76 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaat 135  Q
    |||||||||||||  ||||| |||| |||| || ||||||||||| ||||||||||||||    
T  36963200 ctaaaacatcaaattttttgaaataaagtttaaattctaaaacattaaaagaaaaggaat 36963141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 10112372 - 10112343
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  10112372 ctaaaacatcaaaagaaaaggaatggaggg 10112343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 15233999 - 15234028
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  15233999 ctaaaacatcaaaagaaaaggaatggaggg 15234028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 43040882 - 43040853
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  43040882 ctaaaacatcaaaagaaaaggaatggaggg 43040853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 141
Target Start/End: Complemental strand, 44104578 - 44104550
Alignment:
Q  113 taaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||    
T  44104578 taaaacatcaaaagaaaaggaatggaggg 44104550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 4e-67; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 47669263 - 47669123
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||    
T  47669263 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaaattttggaata 47669164  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47669163 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 47669123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 1e-66
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 46220402 - 46220263
Alignment:
Q  2 aaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatat 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  46220402 aaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatat 46220303  T
Q  102 agttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  46220302 agttgaagttctaaaacatcaaaagaaaaggaatagaggg 46220263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 9e-65
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 10737834 - 10737974
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  10737834 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttagaata 10737933  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||| ||||||||||||||| ||||    
T  10737934 tagttgaagttctaaaacattaaaagaaaaggaatgaaggg 10737974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 4817407 - 4817273
Alignment:
Q  7 tcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttg 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  4817407 tcacaactaccttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaatgataaattcactaaaacatcaaaagttttggaatatagttg 4817308  T
Q  107 aagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||    
T  4817307 aagttctaaaacatcaaaagaaaaggaatggaggg 4817273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 9831647 - 9831507
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  9831647 caaaggtcacaactattttaatagtttattgtgttttccaacaagggtaaacttgagaaaataataacaaattcactaaaacatcaaaagttttggaata 9831548  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  9831547 tagttgaaattctaaaacatcaaaagaaaaggaatggaggg 9831507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 18126994 - 18126855
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  18126994 caaaagtcacaactactt-aatagtttgttgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttagaata 18126896  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18126895 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 18126855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 110; E-Value: 8e-56
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 3384728 - 3384866
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  | |    
T  3384728 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttg--aaa 3384825  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||| |||||||||||||||||||||| ||||| ||||    
T  3384826 tagttgaggttctaaaacatcaaaagaaaaagaatgaaggg 3384866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 4055620 - 4055488
Alignment:
Q  9 acaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaa 108  Q
    ||||||||||||| |||  |||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  4055620 acaactactttaacagtgaattgtgttttccaataagggtaaacttgagaaaacaataattaattcactaaaacatcaaaagttttggaatatagttgaa 4055521  T
Q  109 gttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||    
T  4055520 gttctaaaacatcaaaagaaaaggaatggaggg 4055488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 8889581 - 8889457
Alignment:
Q  6 gtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagtt 105  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8889581 gtcacaactactttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagtt 8889482  T
Q  106 gaagttctaaaacatcaaaagaaaa 130  Q
    ||||||||||||||| |||| ||||    
T  8889481 gaagttctaaaacataaaaaaaaaa 8889457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 48564961 - 48564822
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  48564961 caaaagtcacaactactttaatagtttattgtgttttccatcaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaatttttggaata 48564862  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||| ||||||||| ||||||||| |||||||||    
T  48564861 tagttgaagttttaaaacatc-aaagaaaagtaatggaggg 48564822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 7414351 - 7414211
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||  ||||    
T  7414351 caaatgtcacaactactttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaaaatttaaaata 7414252  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||| |||| ||||||||||    
T  7414251 tagttgaagttctaaaacatcaaaaaaaaatgaatggaggg 7414211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 1236205 - 1236303
Alignment:
Q  43 aagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  1236205 aagggtaaacttgagaaaacaataataaattcactaaaccatcaaaagttttggaatatagttaaagttctaaaacatcaaaagaaaatgaatggaggg 1236303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 39241296 - 39241172
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaa-cttgagaaaacaataataaatttactaaaacatcaaaagttttggaat 99  Q
    |||| |||||||||||||||||||||||| ||||||| ||||||| ||||| ||||| | |||||||||||||| ||| ||||| ||||||||||| |||    
T  39241296 caaaagtcacaactactttaatagtttatggtgtttttcaacaagagtaaaacttgatacaacaataataaattcactgaaacaacaaaagttttgaaat 39241197  T
Q  100 atagttgaagttctaaaacatcaaaa 125  Q
    ||||||||| ||||||||||| ||||    
T  39241196 atagttgaa-ttctaaaacattaaaa 39241172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 1749521 - 1749595
Alignment:
Q  66 aataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagg 140  Q
    |||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||    
T  1749521 aataaattcactaaaacatcaaaagttttggtatataattaaagttctaaaacatcaaaagaaaaggaatagagg 1749595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 26842552 - 26842462
Alignment:
Q  30 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatca 122  Q
    |||||||| |||||||| ||||||||| ||||  ||| ||||| |||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  26842552 tgtgtttttcaacaaggataaacttgaaaaaa--atattaaatatactaaaacatcaaatattttgaaatatagttgaagttctaaaacatca 26842462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 33020275 - 33020210
Alignment:
Q  76 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||| | |||| ||| |||||||||||||||||||||||||||||||    
T  33020275 ctaaaacatcaaaagttttggaaaaaagtttaagctctaaaacatcaaaagaaaaggaatggaggg 33020210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 37875920 - 37875849
Alignment:
Q  17 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaa 88  Q
    ||||||||| |  ||| |||| |||||||| ||||||||||||||||| | ||||| |||||||||||||||    
T  37875920 tttaatagtatggtgtatttttcaacaaggataaacttgagaaaacaacattaaatatactaaaacatcaaa 37875849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 33846820 - 33846921
Alignment:
Q  30 tgtgttttccaacaagggtaaacttgagaaaacaataat-aaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaa 128  Q
    ||||||||  |||||||||||||||||| ||| || ||| |||| |||| ||||||||||  ||||  |||| | |||||||  ||||||||||||||||    
T  33846820 tgtgttttttaacaagggtaaacttgaggaaaaaaaaattaaatatactgaaacatcaaatattttaaaatacacttgaagtcttaaaacatcaaaagaa 33846919  T
Q  129 aa 130  Q
    ||    
T  33846920 aa 33846921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 33947158 - 33947057
Alignment:
Q  30 tgtgttttccaacaagggtaaacttgagaaaacaataat-aaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaa 128  Q
    ||||||||  |||||||||||||||||| ||| || ||| |||| |||| ||||||||||  ||||  |||| | |||||||  ||||||||||||||||    
T  33947158 tgtgttttttaacaagggtaaacttgaggaaaaaaaaattaaatatactgaaacatcaaatattttaaaatacacttgaagtcttaaaacatcaaaagaa 33947059  T
Q  129 aa 130  Q
    ||    
T  33947058 aa 33947057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 49112439 - 49112535
Alignment:
Q  30 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 129  Q
    |||||||| ||||||||||||| ||   ||||||||  ||||| |||||||||||||||  ||||  ||||||||| |||||    ||||||||||||||    
T  49112439 tgtgtttttcaacaagggtaaatttagaaaaacaatgttaaatatactaaaacatcaaatattttaaaatatagttaaagtt----aacatcaaaagaaa 49112534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 1236103 - 1236074
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  1236103 ctaaaacatcaaaagaaaaggaatggaggg 1236074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 9831747 - 9831776
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  9831747 ctaaaacatcaaaagaaaaggaatggaggg 9831776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 10737734 - 10737705
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  10737734 ctaaaacatcaaaagaaaaggaatggaggg 10737705  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 46220503 - 46220532
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  46220503 ctaaaacatcaaaagaaaaggaatggaggg 46220532  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 47669363 - 47669392
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  47669363 ctaaaacatcaaaagaaaaggaatggaggg 47669392  T

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Target: chr1; HSP #26
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 141
Target Start/End: Original strand, 48565063 - 48565090
Alignment:
Q  114 aaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||    
T  48565063 aaaacatcaaaagaaaaggaatggaggg 48565090  T

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Target: chr4 (Bit Score: 117; Significance: 5e-60; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 45590886 - 45590746
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||||||||| |||||    
T  45590886 caaaggtcacaactactttaatagtttattgtgttttccaacaaaggtaaacttgataaaacaataatgaattcactaaaacatcaaaagttttagaata 45590787  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  45590786 tagttgaagttctaaaacatcaaaagaaaatgaatggaggg 45590746  T

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Target: chr4; HSP #2
Raw Score: 115; E-Value: 9e-59
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 34334476 - 34334342
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||    
T  34334476 caaagatcacaactactttaatagtttattgtgtttttcaacaagggtaaacttgagaagacaataataaattcactaaagcatcaaaagttttggaata 34334377  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaat 135  Q
    |||||||||||||||||||||||||||||||||||    
T  34334376 tagttgaagttctaaaacatcaaaagaaaaggaat 34334342  T

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Target: chr4; HSP #3
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 8955909 - 8956049
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||||||||| ||||    
T  8955909 caaaggtcacaactactttaataatttattgtgttttccaataagggtaaacttgataaaacaataacaaattcactaaaacatcaaaagttttgtaata 8956008  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  8956009 tagttgaagttctaaaacatcaaaaaaaaaggaatggaggg 8956049  T

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Target: chr4; HSP #4
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 33288538 - 33288678
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    |||| |||||||||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33288538 caaatgtcacaactactttatcagtatattgtgttttccaacatgggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 33288637  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    || |||||||||||||| ||||||||||||| |||||||||    
T  33288638 taattgaagttctaaaatatcaaaagaaaagaaatggaggg 33288678  T

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Target: chr4; HSP #5
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 49162245 - 49162108
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  49162245 caaaggttacaactactttaatagtttatggtgttttccaacaagg-taaaattgagaaaacaataataaattcactaaaacatcaaaaattttggaata 49162147  T
Q  101 tagttgaagttctaaaacatcaaaagaaaaggaatggag 139  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  49162146 tagttgaagttctgaaacatcaaaagaaaatgaatggag 49162108  T

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Target: chr4; HSP #6
Raw Score: 85; E-Value: 7e-41
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 18835851 - 18835720
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattt--actaaaacatcaaaagttttggaa 98  Q
    |||| ||||||||||||||||||||||||  ||||||| ||||||| |||| ||||||||||||||||| || |  ||||||||||| ||||||||||||    
T  18835851 caaatgtcacaactactttaatagtttatgatgttttctaacaaggataaatttgagaaaacaataatatatattcactaaaacatcgaaagttttggaa 18835752  T
Q  99 tatagttgaagttctaaaacatcaaaagaaaa 130  Q
    ||||||||||||||||||||||||||||||||    
T  18835751 tatagttgaagttctaaaacatcaaaagaaaa 18835720  T

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Target: chr4; HSP #7
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 39482002 - 39481907
Alignment:
Q  46 ggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  39482002 ggtaaacctgagaaaacaataataaatttactaaaacatcaaaagttttggaaaatagttgaagttctaaaacatcaaaagaaaagaaatggaggg 39481907  T

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Target: chr4; HSP #8
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 30469353 - 30469441
Alignment:
Q  53 ttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30469353 ttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatgaaggg 30469441  T

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Target: chr4; HSP #9
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 50774191 - 50774325
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaa-----catcaaaagttttg 95  Q
    |||| ||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||      |||||||||||||    
T  50774191 caaaagtcacgactaatttaatagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaatactgtatcaaaagttttg 50774290  T
Q  96 gaatatagttgaagttctaaaacatcaaaagaaaa 130  Q
     ||||||||| ||||||||||||||||||| ||||    
T  50774291 aaatatagttaaagttctaaaacatcaaaaaaaaa 50774325  T

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Target: chr4; HSP #10
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 36971192 - 36971115
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaa 79  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||    
T  36971192 caaaggtcacaactattttaatagtttattgtgttttccaacaa-ggtaaacttcagaaaacaataataaattcactaa 36971115  T

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Target: chr4; HSP #11
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 26025685 - 26025784
Alignment:
Q  30 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 129  Q
    |||||||| ||||||||||||||||| ||||| |||| ||||| ||||||||  |||||  |||||||||||||||||||| ||||||||||||||||||    
T  26025685 tgtgtttttcaacaagggtaaacttgggaaaa-aatattaaatatactaaaatgtcaaatattttggaatatagttgaagtcctaaaacatcaaaagaaa 26025783  T

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Target: chr4; HSP #12
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 19256255 - 19256190
Alignment:
Q  76 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||    
T  19256255 ctaaaacatcaaaagttttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggaggg 19256190  T

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Target: chr4; HSP #13
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 36968407 - 36968353
Alignment:
Q  76 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36968407 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaaaaaaa 36968353  T

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Target: chr4; HSP #14
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 33109031 - 33109163
Alignment:
Q  1 caaaggtcacaactactttaatagttt-at--tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttgga 97  Q
    ||||||||||||||  ||||||||||| ||  ||||||||  ||||||| ||||||| |||||| |||| ||||| ||||||||||||||   ||||  |    
T  33109031 caaaggtcacaactcatttaatagttttatggtgtgttttttaacaaggataaacttaagaaaaaaatattaaatatactaaaacatcaattattttaaa 33109130  T
Q  98 atatagttgaagttctaaaacatcaaaagaaaa 130  Q
    ||||||||||||| ||||||||| |||||||||    
T  33109131 atatagttgaagtcctaaaacattaaaagaaaa 33109163  T

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Target: chr4; HSP #15
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 36016329 - 36016283
Alignment:
Q  95 ggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36016329 ggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggg 36016283  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 19257103 - 19257133
Alignment:
Q  111 tctaaaacatcaaaagaaaaggaatggaggg 141  Q
    |||||||||||||||||||||||||||||||    
T  19257103 tctaaaacatcaaaagaaaaggaatggaggg 19257133  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 8955809 - 8955780
Alignment:
Q  112 ctaaaacatcaaaagaaaaggaatggaggg 141  Q
    ||||||||||||||||||||||||||||||    
T  8955809 ctaaaacatcaaaagaaaaggaatggaggg 8955780  T

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Target: scaffold0103 (Bit Score: 114; Significance: 3e-58; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 44764 - 44623
Alignment:
Q  1 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaata 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  44764 caaaggtcacaactactttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacctcaaaagttttggaata 44665  T
Q  101 tagttgaagttctaaaacatca-aaagaaaaggaatggaggg 141  Q
    ||||||||||||| |||||||| |||||||||||||| ||||    
T  44664 tagttgaagttctcaaacatcagaaagaaaaggaatgaaggg 44623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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