View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5878-8 (Length: 141)
Name: Solexa-NF5878-8
Description: NF5878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5878-8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 61; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 24235263 - 24235120
Alignment:
| Q |
1 |
caaaggtgatgtgagtgtttagaaccctttgcagttgatatgacctataatctatgannnnnnnn--cagttcgaattatataatctgaactgcataaac |
98 |
Q |
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| T |
24235263 |
caaaggtgacgtgagtgttttgaaccctttgcagttgatatgatctataatttatgtatttttttttcagttcggattataaaatccgaactgcataaac |
24235164 |
T |
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| Q |
99 |
acttcataaaacctcaaaaacacgttaaaa-tttttatgatttt |
141 |
Q |
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| T |
24235163 |
acttcataaaacctcagaaacacgttaaaactttttaggatttt |
24235120 |
T |
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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 333502 - 333445
Alignment:
| Q |
73 |
aattatataatctgaactgcataaacacttcata-aaacctcaaaaacacgttaaaat |
129 |
Q |
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| T |
333502 |
aattatataatctgaacagcataaacacctcatagaaactcccaaaacacgttaaaat |
333445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 16377879 - 16377941
Alignment:
| Q |
68 |
gttcgaattatataatctgaactgcataaacacttcataaaa-cctcaaaaacacgttaaaat |
129 |
Q |
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| T |
16377879 |
gttcggattatataatttaaaccgcataaacacctcataaaaacctcaaaaacacgtaaaaat |
16377941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 33192113 - 33192070
Alignment:
| Q |
66 |
cagttcgaattatataatctgaactgcataaacacttcataaaa |
109 |
Q |
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| T |
33192113 |
cagttcggattataaaatccgaacggcataaacacttcataaaa |
33192070 |
T |
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