View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5879-1 (Length: 264)
Name: Solexa-NF5879-1
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5879-1 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 5e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-76
Query Start/End: Original strand, 99 - 264
Target Start/End: Complemental strand, 1544354 - 1544184
Alignment:
| Q |
99 |
gaatcacattcagtaagacaaatcacaaagatcat-----gatcatgaatttctcacgactattcggcttaagtgtgtaagataaatatattttttacta |
193 |
Q |
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| T |
1544354 |
gaatcacattcagtaagacaaatcacaaagatcatatcatgatcatgaatttctcacgactattcggcttaagtgtgtcagataaatatattttttacta |
1544255 |
T |
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| Q |
194 |
ataaactacgatacttaatgaagtgtatccgacaattttgttttaataaactgacacttaactttcgaata |
264 |
Q |
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| T |
1544254 |
ataaactacgatacttaatgaagtgtatcagacaattttgttttaataaactgacacttaactttcgaata |
1544184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 6e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 6e-46
Query Start/End: Original strand, 104 - 264
Target Start/End: Complemental strand, 32426149 - 32425986
Alignment:
| Q |
104 |
acattcagtaagacaaatcacaaagatcatgatcatgaatttctcacgactattcggcttaagtgtgtaagataaatatatt-ttttactaataaactac |
202 |
Q |
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|||||| |||||||||||||||||||| ||||| || |||||||||||||||||| || |||||| | ||||||||||||| |||||||||||||||| |
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| T |
32426149 |
acattccgtaagacaaatcacaaagatgatgattataaatttctcacgactattcaactgaagtgtatcagataaatatatttttttactaataaactat |
32426050 |
T |
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| Q |
203 |
gatacttaatgaagtgtatccgacaattttgttttaataaac--tgacacttaactttcgaata |
264 |
Q |
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| T |
32426049 |
gatacttaatgaagtatatcagacaattctgttttaataaactatgacacttaactttcgaata |
32425986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 29197239 - 29197176
Alignment:
| Q |
8 |
atgttaaccctccaacatatgttcttctcttttcttttatggtaagtaacaaacaaatacgatc |
71 |
Q |
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| T |
29197239 |
atgttaaccctccaacatatgttcttctcttttcttttatggtaagtaacaaacaaatacgatc |
29197176 |
T |
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