View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5879-11 (Length: 139)
Name: Solexa-NF5879-11
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5879-11 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 3e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 43579240 - 43579348
Alignment:
| Q |
8 |
attataacattgcagcacattcaacatgctcaaattaaaactgttggtagacatgtacatagaatgggggtttccaaaacattcagtagtaagtcagctc |
107 |
Q |
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| T |
43579240 |
attataacattgcagcacattcaacatgctcaaattaaaactgttggtagacatgtacatagaatgggggtttccaaaacattcagtagtaagtcagctc |
43579339 |
T |
|
| Q |
108 |
atgttcatg |
116 |
Q |
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||||||||| |
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| T |
43579340 |
atgttcatg |
43579348 |
T |
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