View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5879-13 (Length: 132)
Name: Solexa-NF5879-13
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5879-13 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 1e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-58
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 4644657 - 4644776
Alignment:
| Q |
8 |
gttgatatcagttccattgttgatttgatttttgaatggaaaaacttgaagaatwgttagtgctgagattactatgtaaaccaccgtgaagtgcacggtg |
107 |
Q |
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| T |
4644657 |
gttgatatcagttccattgttgatttgatttttgaatggaaaaacttgaagaattgttagtgctgagattactatgtaaaccaccgtgaagtgcacggtg |
4644756 |
T |
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| Q |
108 |
ttaatgaaaaaatggatttg |
127 |
Q |
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| T |
4644757 |
ttaaagaaaaaatggatttg |
4644776 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 4636620 - 4636678
Alignment:
| Q |
7 |
agttgatatcagttccattgttgatttgatttttgaatggaaaaacttgaagaatwgtt |
65 |
Q |
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| T |
4636620 |
agttgatatcatttccattgttgatttgattttggaatggaaaaagttgaagaattgtt |
4636678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 1798159 - 1798228
Alignment:
| Q |
9 |
ttgatatcagttccattgttgatttgatttttgaatggaaaaacttgaagaatwgttagtgctgagatta |
78 |
Q |
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| T |
1798159 |
ttgatatcaattccatggttgatttgatatttgaatgaggaaagttgaagaattatgagtgctgagatta |
1798228 |
T |
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