View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5879-15 (Length: 128)

Name: Solexa-NF5879-15
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5879-15
Solexa-NF5879-15
[»] chr6 (9 HSPs)
chr6 (15-128)||(13860854-13860967)
chr6 (8-125)||(14027194-14027311)
chr6 (8-128)||(13943094-13943214)
chr6 (8-128)||(14086715-14086838)
chr6 (24-128)||(14017203-14017307)
chr6 (24-128)||(13470769-13470873)
chr6 (8-128)||(14112599-14112719)
chr6 (23-124)||(13872984-13873085)
chr6 (22-114)||(13890851-13890943)


Alignment Details
Target: chr6 (Bit Score: 98; Significance: 1e-48; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 13860854 - 13860967
Alignment:
Q  15 attgtcattttggaggacaaattcctattcatttggagtctctttcacatttgaaatacttgaatctttcgtggaatcatctagatggtttgattcctca 114  Q
    |||||||||||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13860854 attgtcattttggaggacaaattcatattcaatttgagtctctttcgcatttgaaatacttgaatctttcgtggaatcatctagatggtttgattcctca 13860953  T
Q  115 tcaacttggagatc 128  Q
    ||||||||||||||    
T  13860954 tcaacttggagatc 13860967  T

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Target: chr6; HSP #2
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 14027311 - 14027194
Alignment:
Q  8 ctttcatattgtcattttggaggacaaattcctattcatttggagtctctttcacatttgaaatacttgaatctttcgtggaatcatctagatggtttga 107  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    |||| ||||||||||||||    
T  14027311 ctttcatattgtcattttggaggacaaattcctattcaattggagtctctttcacatttgaaatacttgaatctttccaacaatcttctagatggtttga 14027212  T
Q  108 ttcctcatcaacttggag 125  Q
    ||||||||||||||||||    
T  14027211 ttcctcatcaacttggag 14027194  T

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Target: chr6; HSP #3
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 13943214 - 13943094
Alignment:
Q  8 ctttcatattgtcattttggaggacaaattcctattcatttggagtctctttcacatttgaaatacttgaatctttcgtggaatcatctagatggtttga 107  Q
    |||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |  |||| ||||||||||||||    
T  13943214 ctttcatattgttattttcgaggacaaattcctattcaattggagtctctttcacatttgaaatacttgaatctttcctacaatcttctagatggtttga 13943115  T
Q  108 ttcctcatcaacttggagatc 128  Q
    ||||||||| |||||||||||    
T  13943114 ttcctcatcgacttggagatc 13943094  T

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Target: chr6; HSP #4
Raw Score: 78; E-Value: 9e-37
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 14086838 - 14086715
Alignment:
Q  8 ctttcatattgtcattttggagga---caaattcctattcatttggagtctctttcacatttgaaatacttgaatctttcgtggaatcatctagatggtt 104  Q
    |||||||||||  |||||| ||||   |||||||||||||| |||||||||||||  ||||||||||||||||||||||| |||||| ||||||||||||    
T  14086838 ctttcatattgcaattttgaaggagatcaaattcctattcaattggagtctcttttgcatttgaaatacttgaatctttcatggaattatctagatggtt 14086739  T
Q  105 tgattcctcatcaacttggagatc 128  Q
    ||||||||||||||||||||||||    
T  14086738 tgattcctcatcaacttggagatc 14086715  T

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Target: chr6; HSP #5
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 14017307 - 14017203
Alignment:
Q  24 ttggaggacaaattcctattcatttggagtctctttcacatttgaaatacttgaatctttcgtggaatcatctagatggtttgattcctcatcaacttgg 123  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    ||||||||||||||| |||||||||||| ||||||    
T  14017307 ttggaggacaaattcctattcaattggagtctctttcacatttgaaatacttggatctttccaacaatcatctagatggtgtgattcctcatcgacttgg 14017208  T
Q  124 agatc 128  Q
    |||||    
T  14017207 agatc 14017203  T

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Target: chr6; HSP #6
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 13470769 - 13470873
Alignment:
Q  24 ttggaggacaaattcctattcatttggagtctctttcacatttgaaatacttgaatctttcgtggaatcatctagatggtttgattcctcatcaacttgg 123  Q
    |||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||    || | |||||||||| | |||||||||| ||||||    
T  13470769 ttggaggacaaattcctattcaattcgagtctctttctcatttgaaatacttgaatctttcaaacaaccgtctagatggtgttattcctcatcgacttgg 13470868  T
Q  124 agatc 128  Q
    |||||    
T  13470869 agatc 13470873  T

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Target: chr6; HSP #7
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 14112719 - 14112599
Alignment:
Q  8 ctttcatattgtcattttggaggacaaattcctattcatttggagtctctttcacatttgaaatacttgaatctttcgtggaatcatctagatggtttga 107  Q
    |||||| ||||| ||||||| |||| |||||||||||  |||| |||||||||||||||||||||| | ||||||||    |||| |||||||||| |||    
T  14112719 ctttcaaattgttattttggcggacgaattcctattccattggggtctctttcacatttgaaatacataaatctttccaacaatcgtctagatggtgtga 14112620  T
Q  108 ttcctcatcaacttggagatc 128  Q
    ||||| ||| |||||||||||    
T  14112619 ttcctaatcgacttggagatc 14112599  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 13872984 - 13873085
Alignment:
Q  23 tttggaggacaaattcctattcatttggagtctctttcacatttgaaatacttgaatctttcgtggaatcatctagatggtttgattcctcatcaacttg 122  Q
    ||||| ||| ||||| | ||||| || ||||||||| | ||||||||||| |||| |||||| | |||| |||| |||||||||||||||||||||||||    
T  13872984 tttggtggaaaaatttcaattcaatttgagtctcttccgcatttgaaatatttgagtctttcctcgaatgatctcgatggtttgattcctcatcaacttg 13873083  T
Q  123 ga 124  Q
    ||    
T  13873084 ga 13873085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 13890851 - 13890943
Alignment:
Q  22 ttttggaggacaaattcctattcatttggagtctctttcacatttgaaatacttgaatctttcgtggaatcatctagatggtttgattcctca 114  Q
    |||||||||||||||||||||||| || ||||| ||||  |||||||||||||||||  ||||  | ||| |||| |||||||||||||||||    
T  13890851 ttttggaggacaaattcctattcaatttgagtcactttaccatttgaaatacttgaaaatttccggcaatgatctggatggtttgattcctca 13890943  T

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