View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5879-16 (Length: 127)
Name: Solexa-NF5879-16
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5879-16 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0320 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 8e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 47893968 - 47894087
Alignment:
| Q |
8 |
taatttaattgggaatcaaaattagggtattattaggaataagaatgaaatgaattgacgtaccatgtttctatgtggtgatgataacaagaaggttagg |
107 |
Q |
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| T |
47893968 |
taatttaattgggaatcaaaattagggtattattaggaataagaatgaaatgaattgacgtaccatgtttctatgtggtgatgataacaagaaggttagg |
47894067 |
T |
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| Q |
108 |
tgagaactcaaagaattgaa |
127 |
Q |
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| T |
47894068 |
tgagaactcaaagaattgaa |
47894087 |
T |
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Target: scaffold0320 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 19870 - 19832
Alignment:
| Q |
26 |
aaattagggtattattaggaataagaatgaaatgaattg |
64 |
Q |
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| T |
19870 |
aaattagggtattattatgactaagaatgaaatgaattg |
19832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 50680733 - 50680695
Alignment:
| Q |
26 |
aaattagggtattattaggaataagaatgaaatgaattg |
64 |
Q |
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| T |
50680733 |
aaattagggtattattatgactaagaatgaaatgaattg |
50680695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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