View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5879-2 (Length: 224)
Name: Solexa-NF5879-2
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5879-2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 39 - 224
Target Start/End: Original strand, 42758954 - 42759140
Alignment:
| Q |
39 |
aaaactgaataattattagagttgcacaaagcacttgtagtaaaaaa-gcattttagtaagttaccctgtatccttttaaaaataaccttctatatttcc |
137 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42758954 |
aaaactgaataattattagagttgcacaaagctactgtagtaaaaaaagtatttcagtaagttaccctgtatccttttaaaaataaccttctatattttc |
42759053 |
T |
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| Q |
138 |
agattagcagtgtttcatataaacgcaacatttctttaatagagtgttgtaaagaggcagttattggtgtttttagtttttattcct |
224 |
Q |
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| T |
42759054 |
agattagcagtgtttcatataaacgcaacatttctttaatagagtgttgtaaagaggcagttattgttgtttttagtttttattcct |
42759140 |
T |
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