View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5879-21 (Length: 49)
Name: Solexa-NF5879-21
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5879-21 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 38; Significance: 0.0000000000002; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 30340021 - 30340058
Alignment:
| Q |
12 |
tacccttatctgcctcaatcaccatcgcaaaattcaat |
49 |
Q |
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| T |
30340021 |
tacccttatctgcctcaatcaccatcgcaaaattcaat |
30340058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 30243856 - 30243893
Alignment:
| Q |
12 |
tacccttatctgcctcaatcaccatcgcaaaattcaat |
49 |
Q |
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| T |
30243856 |
tacccttatctgcctcaatcaccatcgcaaaaatcaat |
30243893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 30748264 - 30748227
Alignment:
| Q |
12 |
tacccttatctgcctcaatcaccatcgcaaaattcaat |
49 |
Q |
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| T |
30748264 |
tacccttatctgcctcaatcacaatcgcaaaattcaat |
30748227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 30434443 - 30434412
Alignment:
| Q |
12 |
tacccttatctgcctcaatcaccatcgcaaaa |
43 |
Q |
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| T |
30434443 |
tacccttatctgcctcaatcaccatcgcaaaa |
30434412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 27; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 30058664 - 30058626
Alignment:
| Q |
12 |
tacccttatctg-cctcaatcaccatcgcaaaattcaat |
49 |
Q |
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|||||||||||| |||| ||||||||||||||||||||| |
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| T |
30058664 |
tacccttatctggcctcgatcaccatcgcaaaattcaat |
30058626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 28; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 26705882 - 26705851
Alignment:
| Q |
12 |
tacccttatctgcctcaatcaccatcgcaaaa |
43 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
26705882 |
tacccttatctgcctcaatcaccatcacaaaa |
26705851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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