View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5879-4 (Length: 155)
Name: Solexa-NF5879-4
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5879-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 1e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 1e-79
Query Start/End: Original strand, 6 - 155
Target Start/End: Original strand, 1543767 - 1543916
Alignment:
| Q |
6 |
cagagacatgcagagtaggcctccagtgcagaattctggtccacctccaaacaatgcttaccctcccaacaatggtggcggataccctttcaacaaccaa |
105 |
Q |
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| T |
1543767 |
cagagacatgcagagtaggcctccagtgcagaattctggtccacctccaaacaatgcttaccctcccaacaatggtggcggataccctttcaacaaccaa |
1543866 |
T |
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| Q |
106 |
gctggatatgcccctccaaatcaaggtggatacgctcctccaaatgcagg |
155 |
Q |
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| T |
1543867 |
gctggatatgcccctccaaatcaaggtggatacgctcctccaaatgcagg |
1543916 |
T |
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Target: chr2 (Bit Score: 51; Significance: 1e-20; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 32421436 - 32421490
Alignment:
| Q |
6 |
cagagacatgcagagtaggcctccagtgcagaattctggtccacctccaaacaat |
60 |
Q |
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| T |
32421436 |
cagagacatgcagagtaggcctccagtgcagaattctggtccacctcccaacaat |
32421490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 32421524 - 32421610
Alignment:
| Q |
64 |
taccctcccaacaatggtggcggataccctttcaacaaccaagctggatatgcccctccaaatcaaggtggatacgctcctccaaat |
150 |
Q |
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| T |
32421524 |
taccctcccaacaatgctggcggataccctcctaacaatcaagctggatactcccctccaaatcaatctggatactcccctccaaat |
32421610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 32421641 - 32421687
Alignment:
| Q |
109 |
ggatatgcccctccaaatcaaggtggatacgctcctccaaatgcagg |
155 |
Q |
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| T |
32421641 |
ggatacgcccctccaaatcaaggtggatatgctcctccaaatgcagg |
32421687 |
T |
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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 32421611 - 32421658
Alignment:
| Q |
103 |
caagctggatatgcccctccaaatcaaggtggatacgctcctccaaat |
150 |
Q |
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| T |
32421611 |
caagctggatacgcccctccaaatcaaggcggatacgcccctccaaat |
32421658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 32425686 - 32425738
Alignment:
| Q |
103 |
caagctggatatgcccctccaaatcaaggtggatacgctcctccaaatgcagg |
155 |
Q |
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| T |
32425686 |
caagctggacacgcctctgcaaatcaaggcggatacgcttctccaaatgcagg |
32425738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 32421591 - 32421634
Alignment:
| Q |
107 |
ctggatatgcccctccaaatcaaggtggatacgctcctccaaat |
150 |
Q |
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| T |
32421591 |
ctggatactcccctccaaatcaagctggatacgcccctccaaat |
32421634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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