View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5879-6 (Length: 143)
Name: Solexa-NF5879-6
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5879-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 7e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 7e-47
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 47894499 - 47894359
Alignment:
| Q |
1 |
gagagagaagaataactctacccataaataaaacttgtgcctcagacataagttaaggaactnnnnnnngaattaataaattaattttatatcaaaaata |
100 |
Q |
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| T |
47894499 |
gagatagaagaataactctacccataaataaaacttgtgccttagacataagttaaggaa--aaaaaaagaattaataaattaattttatattaaaaata |
47894402 |
T |
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| Q |
101 |
tatttcttaaactttttacatcatttaatacacgagttctaag |
143 |
Q |
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| T |
47894401 |
tatttcttaaactttttacatcattaaatacacgagttctaag |
47894359 |
T |
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