View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5879-7 (Length: 142)

Name: Solexa-NF5879-7
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5879-7
Solexa-NF5879-7
[»] chr4 (7 HSPs)
chr4 (1-142)||(4644827-4644968)
chr4 (4-128)||(42459110-42459234)
chr4 (1-101)||(901597-901697)
chr4 (13-110)||(33319308-33319405)
chr4 (4-101)||(30844913-30845010)
chr4 (14-98)||(21118243-21118327)
chr4 (48-100)||(9026116-9026168)
[»] scaffold0481 (1 HSPs)
scaffold0481 (1-132)||(10583-10714)
[»] chr2 (6 HSPs)
chr2 (4-132)||(32467194-32467322)
chr2 (4-132)||(15343000-15343128)
chr2 (4-123)||(3408401-3408520)
chr2 (4-110)||(21639220-21639323)
chr2 (28-93)||(17362901-17362966)
chr2 (17-70)||(16363165-16363218)
[»] chr7 (11 HSPs)
chr7 (5-128)||(28244420-28244543)
chr7 (4-111)||(20216333-20216440)
chr7 (4-101)||(25783738-25783835)
chr7 (16-98)||(26630475-26630557)
chr7 (4-90)||(31188225-31188311)
chr7 (4-99)||(39973439-39973534)
chr7 (4-99)||(47247688-47247783)
chr7 (44-93)||(4577979-4578028)
chr7 (7-110)||(30712846-30712949)
chr7 (4-90)||(20219314-20219400)
chr7 (4-63)||(10059531-10059590)
[»] chr8 (6 HSPs)
chr8 (4-140)||(14090355-14090491)
chr8 (4-138)||(8269116-8269249)
chr8 (4-101)||(36831834-36831931)
chr8 (4-110)||(42277714-42277820)
chr8 (4-53)||(27470687-27470736)
chr8 (4-123)||(43095552-43095671)
[»] chr5 (8 HSPs)
chr5 (4-128)||(17221716-17221840)
chr5 (4-122)||(43453135-43453253)
chr5 (17-101)||(6658717-6658801)
chr5 (16-90)||(38364923-38364997)
chr5 (4-41)||(32421195-32421232)
chr5 (28-90)||(10014993-10015055)
chr5 (4-70)||(20828372-20828438)
chr5 (9-93)||(26183986-26184070)
[»] chr6 (1 HSPs)
chr6 (4-103)||(25062463-25062562)
[»] chr3 (8 HSPs)
chr3 (4-110)||(23458534-23458640)
chr3 (14-140)||(27991632-27991758)
chr3 (4-110)||(51897504-51897610)
chr3 (4-99)||(39348083-39348178)
chr3 (7-110)||(42722970-42723073)
chr3 (7-101)||(8626595-8626689)
chr3 (4-90)||(43722387-43722473)
chr3 (28-92)||(26853198-26853262)
[»] scaffold0009 (1 HSPs)
scaffold0009 (4-110)||(235377-235483)
[»] scaffold0391 (1 HSPs)
scaffold0391 (28-101)||(457-530)
[»] chr1 (8 HSPs)
chr1 (6-110)||(10885700-10885804)
chr1 (5-75)||(42097082-42097152)
chr1 (4-90)||(50543595-50543681)
chr1 (5-101)||(28793642-28793738)
chr1 (4-123)||(35065625-35065743)
chr1 (4-75)||(43628339-43628410)
chr1 (4-91)||(23047431-23047518)
chr1 (19-99)||(17999575-17999655)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 2e-65; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 4644968 - 4644827
Alignment:
Q  1 gcagagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattg 100  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  4644968 gcagagaggtgacacgaggagacatcgagcttccatcttttgtttggggagatgatagtgacacttgatgatgtgtcgtgtttgctgcatctccccattg 4644869  T
Q  101 atggtatgcttttatcccacgagagtatgacatgggacgagg 142  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4644868 atggtatgcttttatcccacgagagtatgacatgggacgagg 4644827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 42459234 - 42459110
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    |||||||| ||||||||||| |||||||||||| ||||  ||  |||||||| |||||||||||||| |||||| |||||| ||| |||| |||||||||    
T  42459234 gagaggtgccacgaggagacttcgagcttccatattccaattaaggagatgacagtgacacttgatgatgtgtcatgtttgatgcgtctccccattgatg 42459135  T
Q  104 gtatgcttttatcccacgagagtat 128  Q
    | |||||||| |||||| |||||||    
T  42459134 gcatgcttttttcccacaagagtat 42459110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 901597 - 901697
Alignment:
Q  1 gcagagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattg 100  Q
    ||||||||||| ||||| ||||| | ||||||||||||||  ||||||||||||| |||||||||||||| |||||| ||||||||||| ||| ||||||    
T  901597 gcagagaggtggcacgatgagactttgagcttccatcttctatttggggagatgacagtgacacttgatgatgtgtcatgtttgctgcacctccccattg 901696  T
Q  101 a 101  Q
    |    
T  901697 a 901697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 33319405 - 33319308
Alignment:
Q  13 cacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggtatgct 110  Q
    ||||||||||||||||| ||||||||||||| || |||||||| ||||||||| |||| ||||||  ||||| |||||||  ||||||||||||||||    
T  33319405 cacgaggagacatcgagtttccatcttccgtgtgcggagatgacagtgacactcgatgatgtgtctcgtttgatgcatcttcccattgatggtatgct 33319308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 30845010 - 30844913
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattga 101  Q
    |||| ||| ||||||||||| || |||||||| |||||||||| |||||| | ||| |||||||||| |||| | | |||||||||| || |||||||    
T  30845010 gagatgtggcacgaggagacttccagcttccaccttccgtttgaggagataacagtcacacttgatgatgtgacctatttgctgcatatccccattga 30844913  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 21118243 - 21118327
Alignment:
Q  14 acgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccat 98  Q
    |||||||||| || ||||||||| || || ||  |||||| | | |||||||||||| |||||| ||||||||||||||| ||||    
T  21118243 acgaggagacgtctagcttccatttttcgattaaggagataacaatgacacttgatgatgtgtcatgtttgctgcatctccccat 21118327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 9026116 - 9026168
Alignment:
Q  48 ggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattg 100  Q
    |||||||| |||||||||||||| |||||| ||| |||||||| | |||||||    
T  9026116 ggagatgagagtgacacttgatgatgtgtcatgtctgctgcatttgtccattg 9026168  T

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Target: scaffold0481 (Bit Score: 88; Significance: 1e-42; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 10583 - 10714
Alignment:
Q  1 gcagagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattg 100  Q
    ||||||||||  |||||||||||||||||| |||||||| ||||| ||||||||| |||||||||||||| |||||| ||||||||||||||| ||||||    
T  10583 gcagagaggtcgcacgaggagacatcgagcctccatcttgcgtttcgggagatgacagtgacacttgatgatgtgtcatgtttgctgcatctccccattg 10682  T
Q  101 atggtatgcttttatcccacgagagtatgaca 132  Q
    ||||||||||||| ||||||||||| ||||||    
T  10683 atggtatgcttttgtcccacgagagaatgaca 10714  T

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Target: chr2 (Bit Score: 77; Significance: 4e-36; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 32467322 - 32467194
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    |||||||| |||||||| |||||||||||||||||||| |||  |||||||| |||||||||||||| |||||| ||||||||||||||| || ||||||    
T  32467322 gagaggtggcacgaggatacatcgagcttccatcttccattttaggagatgacagtgacacttgatgatgtgtcatgtttgctgcatctcccccttgatg 32467223  T
Q  104 gtatgcttttatcccacgagagtatgaca 132  Q
    |||||||||| | |||||| |||||||||    
T  32467222 gtatgcttttgttccacgaaagtatgaca 32467194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 15343000 - 15343128
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    |||||||| |||  |||||||||||||||||||||||| ||| |||||||||| |||| ||| |||| |||||| ||||||||||||||| ||||| |||    
T  15343000 gagaggtggcacacggagacatcgagcttccatcttccattttgggagatgattgtgatactcgatgatgtgtcatgtttgctgcatctccccattaatg 15343099  T
Q  104 gtatgcttttatcccacgagagtatgaca 132  Q
    || || |||| || || ||||||||||||    
T  15343100 gtttgtttttgtcacatgagagtatgaca 15343128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 3408520 - 3408401
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    |||||||| ||||||||||| || |||||||| ||||||||| ||||||||| ||| |||||||| | |||| | | |||||||||| || |||||||||    
T  3408520 gagaggtggcacgaggagacttccagcttccaccttccgtttcgggagatgacagtcacacttgacgatgtggcctctttgctgcatatccccattgatg 3408421  T
Q  104 gtatgcttttatcccacgag 123  Q
    | |||||  | |||||||||    
T  3408420 gcatgctcctgtcccacgag 3408401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 21639220 - 21639323
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    |||||||| ||| ||||||| || |||||||| ||    ||||||||||| | ||| |||||||||| |||| | ||||||||||||||||||||||| |    
T  21639220 gagaggtggcacaaggagacttccagcttccaccta---tttggggagataacagtcacacttgatgatgtggcctgtttgctgcatctctccattgacg 21639316  T
Q  104 gtatgct 110  Q
    | |||||    
T  21639317 gcatgct 21639323  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 17362966 - 17362901
Alignment:
Q  28 agcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctc 93  Q
    ||||||||||||| | | |||||||||| ||||||||||||||  ||||| ||| |||||||||||    
T  17362966 agcttccatcttctgatgggggagatgacagtgacacttgatgacgtgtcatgtctgctgcatctc 17362901  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 16363165 - 16363218
Alignment:
Q  17 aggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatg 70  Q
    ||||||| || ||||||||||||| | |||||||||| |||| |||||||||||    
T  16363165 aggagacgtctagcttccatcttctgattggggagatcatagcgacacttgatg 16363218  T

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Target: chr7 (Bit Score: 76; Significance: 2e-35; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 28244420 - 28244543
Alignment:
Q  5 agaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatgg 104  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| ||||| || ||||||||||    
T  28244420 agaggtgtcacgaggagacttcgagcttccatcttccgtttggggagatgacagtgacacttgatgatgtgtcatgtttgttgcatatccccattgatgg 28244519  T
Q  105 tatgcttttatcccacgagagtat 128  Q
     |||||  | ||||||||||||||    
T  28244520 catgctcctgtcccacgagagtat 28244543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 20216440 - 20216333
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    ||||||||  |||||||||| ||||| || || ||||||||||||||||||| | |||||||||||| |||||| |||||||| |||||| |||||||||    
T  20216440 gagaggtggtacgaggagacttcgagttttcaccttccgtttggggagatgacaatgacacttgatgatgtgtcttgtttgcttcatctccccattgatg 20216341  T
Q  104 gtatgctt 111  Q
    | ||||||    
T  20216340 gcatgctt 20216333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 25783835 - 25783738
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattga 101  Q
    |||||||| ||||||||||  || |||||||| |||| |||| ||||||||| ||| |||||||||| |||| | ||||||||||||||| |||||||    
T  25783835 gagaggtggcacgaggagaattccagcttccaccttctgtttagggagatgacagtcacacttgatgatgtggcatgtttgctgcatctccccattga 25783738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 26630557 - 26630475
Alignment:
Q  16 gaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccat 98  Q
    |||||||| |||||||||||| || | |||||||||| || | ||||||||||||  ||||| ||||||||||||||||||||    
T  26630557 gaggagacttcgagcttccatatttcatttggggagaggacaatgacacttgatgacgtgtcttgtttgctgcatctctccat 26630475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 31188311 - 31188225
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcat 90  Q
    |||||||| ||| ||||||| || |||||||| ||||||||||||||||||| ||| |||||||||| |||| | | ||||||||||    
T  31188311 gagaggtggcacaaggagacttccagcttccaccttccgtttggggagatgacagtcacacttgatgatgtggcctctttgctgcat 31188225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 39973439 - 39973534
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccatt 99  Q
    ||||||||  |||||||||| || |||||||| ||||||||||||||||||| | | |||||||| | |||| | | |||||||||| || |||||    
T  39973439 gagaggtggtacgaggagacttccagcttccaccttccgtttggggagatgacaatcacacttgacgatgtggcctctttgctgcatatccccatt 39973534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 47247688 - 47247783
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccatt 99  Q
    |||||||| ||||||||||| || |||||||| ||||| |||| |||||||| ||| |||||||| | |||| | | |||||||||| || |||||    
T  47247688 gagaggtggcacgaggagacttccagcttccaccttccatttgtggagatgacagtcacacttgacgatgtggcctctttgctgcatatccccatt 47247783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 4577979 - 4578028
Alignment:
Q  44 ttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctc 93  Q
    |||||||||||| |||||||||||||| |||||| |||||||||| ||||    
T  4577979 ttggggagatgaaagtgacacttgatgatgtgtcatgtttgctgcgtctc 4578028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 30712949 - 30712846
Alignment:
Q  7 aggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggta 106  Q
    ||||| ||||||||||| || |||||||| |||| |||| ||||| ||| ||| |||||||| | |||| | | |||||||||| || ||||||| || |    
T  30712949 aggtggcacgaggagacttccagcttccaccttcagtttagggaggtgacagtcacacttgacgatgtggcctctttgctgcatatccccattgaaggca 30712850  T
Q  107 tgct 110  Q
    ||||    
T  30712849 tgct 30712846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 20219400 - 20219314
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcat 90  Q
    |||||||| ||| ||||||| || |||||||| |||| |||||||||||||| | | |||||||| | |||| | | ||||||||||    
T  20219400 gagaggtggcacaaggagacttccagcttccaccttctgtttggggagatgacaatcacacttgacgatgtggcttatttgctgcat 20219314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 10059590 - 10059531
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgaca 63  Q
    ||||| |||||| || |||| || ||||| ||||||| | ||||||||||||||||||||    
T  10059590 gagagatgacacaagtagacgtctagcttacatcttctgattggggagatgatagtgaca 10059531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 1e-33; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 14090491 - 14090355
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    |||||||||||||||||||| ||||| ||||| ||| | || |||| ||||| |||||||||||||| |||||| ||||||||||||||| |||||||||    
T  14090491 gagaggtgacacgaggagacttcgagtttccacctttcattaggggggatgacagtgacacttgatgatgtgtcatgtttgctgcatctccccattgatg 14090392  T
Q  104 gtatgcttttatcccacgagagtatgacatgggacga 140  Q
    | |||||| | |||||||||| ||| |||||||||||    
T  14090391 gcatgcttctctcccacgagactatcacatgggacga 14090355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 8269116 - 8269249
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    |||||||| |||||||||||||| |||||||||||||| ||| ||||||||| |||||||||| ||| |||| | |||||||| |||||  |||||||||    
T  8269116 gagaggtggcacgaggagacatcaagcttccatcttccatttcgggagatgacagtgacacttaatgatgtg-catgtttgctccatcttaccattgatg 8269214  T
Q  104 gtatgcttttatcccacgagagtatgacatgggac 138  Q
    ||||| |||| || |||||||||||| || |||||    
T  8269215 gtatgtttttgtcacacgagagtatggcaagggac 8269249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 36831834 - 36831931
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattga 101  Q
    |||||||| ||||||||||| || |||||||| ||||||||||||||||||| ||| |||||||||| |||| | | |||||||||| || |||||||    
T  36831834 gagaggtggcacgaggagacttccagcttccaccttccgtttggggagatgacagtcacacttgatgatgtggcctctttgctgcatatccccattga 36831931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 42277714 - 42277820
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    |||||||| ||||||||||| || | |||||| ||||||||||||||||||| ||| |||||||||| |||| | | |||| ||||| ||  ||||||||    
T  42277714 gagaggtggcacgaggagacttccaacttccaccttccgtttggggagatgacagtcacacttgatgatgtgacctctttgatgcatatccgcattgatg 42277813  T
Q  104 gtatgct 110  Q
    | |||||    
T  42277814 gcatgct 42277820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 27470736 - 27470687
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagat 53  Q
    |||||||||||||||||||| || |||||||| |||||||||||||||||    
T  27470736 gagaggtgacacgaggagacttccagcttccaccttccgtttggggagat 27470687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 43095552 - 43095671
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    |||||||| || |||||||| || ||||||||  |||  ||||||||||| | ||| |||||||| | |||| | | |||||||||| || ||||||| |    
T  43095552 gagaggtggcatgaggagacttccagcttccactttctatttggggagataacagtcacacttgacgatgtggcctctttgctgcatatccccattgacg 43095651  T
Q  104 gtatgcttttatcccacgag 123  Q
    | |||||  | |||||||||    
T  43095652 gcatgctcctgtcccacgag 43095671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 1e-33; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 17221840 - 17221716
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    |||||||| ||||||||||| ||||||||||||| ||| ||||| ||||||| |||||||||||||| |||||| ||||||||||||||| | |||||||    
T  17221840 gagaggtggcacgaggagacttcgagcttccatcctccttttggcgagatgacagtgacacttgatgatgtgtcctgtttgctgcatctccctattgatg 17221741  T
Q  104 gtatgcttttatcccacgagagtat 128  Q
    | ||| |||| ||||||||||||||    
T  17221740 gcatgattttgtcccacgagagtat 17221716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 43453253 - 43453135
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    |||||||| || |||||||  || |||||||||||||||||||||||||||| | |||||||||||| |||||| |||||| ||||||||   ||| |||    
T  43453253 gagaggtggcatgaggagatttcaagcttccatcttccgtttggggagatgacaatgacacttgatgatgtgtcatgtttgttgcatctccaaattaatg 43453154  T
Q  104 gtatgcttttatcccacga 122  Q
    | |||||| | ||||||||    
T  43453153 gcatgcttctgtcccacga 43453135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 6658717 - 6658801
Alignment:
Q  17 aggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattga 101  Q
    ||||||| || |||||||| |||| |||||||||||||| ||| |||||||||| |||| | | |||||||||| || |||||||    
T  6658717 aggagacttccagcttccaccttctgtttggggagatgacagtcacacttgatgatgtggcctctttgctgcatatccccattga 6658801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 38364923 - 38364997
Alignment:
Q  16 gaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcat 90  Q
    |||||||| || || ||||| ||||| ||||||||||||||||| |||||||||| |||| | | ||||||||||    
T  38364923 gaggagacttctagattccaccttccatttggggagatgatagtcacacttgatgatgtggcctctttgctgcat 38364997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 32421195 - 32421232
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttcc 41  Q
    |||||||| |||||||||||||||||||||||||||||    
T  32421195 gagaggtggcacgaggagacatcgagcttccatcttcc 32421232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 10014993 - 10015055
Alignment:
Q  28 agcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcat 90  Q
    ||||| || ||||||||||||||||||| ||| |||||||||| |||| | | ||||||||||    
T  10014993 agctttcaccttccgtttggggagatgacagtcacacttgatgatgtggcctctttgctgcat 10015055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 20828438 - 20828372
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatg 70  Q
    |||||||| ||||||||||| || || ||||| |||||||| |||||| ||| ||| ||||||||||    
T  20828438 gagaggtggcacgaggagacttccaggttccaccttccgttcggggaggtgacagtcacacttgatg 20828372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 26183986 - 26184070
Alignment:
Q  9 gtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctc 93  Q
    |||||||||| ||||||  ||||| || |||||  |||||||||||| | ||||||| |||| |||| | ||| |||||||||||    
T  26183986 gtgacacgagaagacatatagctttcaacttccaattggggagatgacattgacactggatgatgtgccatgtctgctgcatctc 26184070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 4e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 25062562 - 25062463
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    |||||||||||||||||||| ||||||||||||||| |||||||| |||||| |||||||||||||| |||||| |||||||| ||||||||||||||||    
T  25062562 gagaggtgacacgaggagacttcgagcttccatctttcgtttgggaagatgacagtgacacttgatgatgtgtcatgtttgcttcatctctccattgatg 25062463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 2e-25; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 23458534 - 23458640
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    ||||| || |||||||||||||||| ||| ||||||||||||||||| ||||||||| |||| |||| |||||| ||||||||||||||| |||| || |    
T  23458534 gagagatggcacgaggagacatcgaactttcatcttccgtttggggatatgatagtggcactggatgatgtgtcatgtttgctgcatctcgccatcgagg 23458633  T
Q  104 gtatgct 110  Q
    |||||||    
T  23458634 gtatgct 23458640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 27991758 - 27991632
Alignment:
Q  14 acgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggtatgctttt 113  Q
    ||||| |||| ||||||||||||||||| |||  ||||||||  ||||||||||||| |||||| ||||||||| ||||| |||||||||| ||| | ||    
T  27991758 acgagaagacttcgagcttccatcttccatttacggagatgacggtgacacttgatgatgtgtcatgtttgctggatctccccattgatggcatgttgtt 27991659  T
Q  114 atcccacgagagtatgacatgggacga 140  Q
     ||||||||| |||||||| |||||||    
T  27991658 gtcccacgagggtatgacaagggacga 27991632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 51897504 - 51897610
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    |||||||| ||||||||||| || |||||||| ||||||||||||||||||| | | |||||||||| |||| | | |||||||||| || ||||||| |    
T  51897504 gagaggtggcacgaggagacttccagcttccaccttccgtttggggagatgacaatcacacttgatgatgtggcctctttgctgcatatccccattgacg 51897603  T
Q  104 gtatgct 110  Q
    | |||||    
T  51897604 gcatgct 51897610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 39348083 - 39348178
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccatt 99  Q
    |||||||| |||||||| || || |||||||| ||||||||||||||||||| | | |||||||||| |||| | | |||||||||| || |||||    
T  39348083 gagaggtggcacgaggatacttccagcttccaccttccgtttggggagatgacaatcacacttgatgatgtggcctctttgctgcatatccccatt 39348178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 42722970 - 42723073
Alignment:
Q  7 aggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggta 106  Q
    ||||| ||||||||||| || |||||||| ||| |||||||||| |||| ||| |||||||||| |||| | | |||||||||| ||  ||||||||| |    
T  42722970 aggtggcacgaggagacttccagcttccacctttcgtttggggaaatgacagtcacacttgatgatgtggcctctttgctgcatatcctcattgatggca 42723069  T
Q  107 tgct 110  Q
    ||||    
T  42723070 tgct 42723073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 8626689 - 8626595
Alignment:
Q  7 aggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattga 101  Q
    ||||| ||||||||||| || |||||||| ||||||||||||||||||| ||| |||||||| | | || | | |||||||||| || |||||||    
T  8626689 aggtggcacgaggagacttccagcttccaccttccgtttggggagatgacagtcacacttgacgatatggcctctttgctgcatatccccattga 8626595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 43722387 - 43722473
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcat 90  Q
    |||||||| ||||||||||| || |||||||| |||| |||| ||||||||| |||  ||||||||| |||| | | ||||||||||    
T  43722387 gagaggtggcacgaggagacttccagcttccaccttctgtttagggagatgacagtctcacttgatgatgtggcctctttgctgcat 43722473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 26853262 - 26853198
Alignment:
Q  28 agcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatct 92  Q
    ||||||||||||| | | |  |||||||||||||||||||||| |||||  |||||| |||||||    
T  26853262 agcttccatcttctgatggatgagatgatagtgacacttgatgatgtgttatgtttgttgcatct 26853198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 47; Significance: 3e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 235377 - 235483
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    |||||||| |||||| |||| || |||||||| ||||| ||||||||||||| | | |||||||||| |||| | ||||||||||||||| ||||||| |    
T  235377 gagaggtggcacgagtagacttccagcttccaccttccatttggggagatgacattcacacttgatgatgtggcctgtttgctgcatctccccattgacg 235476  T
Q  104 gtatgct 110  Q
    | |||||    
T  235477 gcatgct 235483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 530 - 457
Alignment:
Q  28 agcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattga 101  Q
    ||||||||||||||| || |||||||||||||||||||||| | | |||| ||| |||||||||||||||||||    
T  530 agcttccatcttccgatttgggagatgatagtgacacttgacgatttgtcatgtctgctgcatctctccattga 457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 5e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 10885700 - 10885804
Alignment:
Q  6 gaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggt 105  Q
    |||||| ||||||||||| || |||||||| ||||| |||||||| |||| ||| |||||||||| |||| | | |||||||||| || ||||||||||     
T  10885700 gaggtggcacgaggagacttccagcttccagcttccatttggggaaatgaaagtcacacttgatgatgtggcctctttgctgcatatccccattgatggc 10885799  T
Q  106 atgct 110  Q
    |||||    
T  10885800 atgct 10885804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 42097152 - 42097082
Alignment:
Q  5 agaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 75  Q
    ||||||||||||||||||| || |||||||| ||||||||| ||||||||| ||| |||||||||| ||||    
T  42097152 agaggtgacacgaggagacttccagcttccaccttccgtttagggagatgacagtcacacttgatgatgtg 42097082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 50543595 - 50543681
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcat 90  Q
    |||||||| ||||||||||| || |||||||| ||||||||||||||||||| ||| |||||||| | |||| | | ||||||||||    
T  50543595 gagaggtggcacgaggagacttccagcttccaccttccgtttggggagatgacagtcacacttgacgatgtggcctctttgctgcat 50543681  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 28793738 - 28793642
Alignment:
Q  5 agaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattga 101  Q
    ||||||| ||||||||||| || |||||||| ||||| ||||||||||||| ||| |||||||||| |||| | | |||| ||||| || |||||||    
T  28793738 agaggtggcacgaggagacttccagcttccaccttccatttggggagatgacagtcacacttgatgatgtggcctctttgttgcatatccccattga 28793642  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 35065625 - 35065743
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 103  Q
    |||||||| ||||||||||| || | |||||| |||| |||||||||||||| | | || ||||||| |||| | | |||||||||| |||||||||| |    
T  35065625 gagaggtggcacgaggagacttccaacttccaccttcggtttggggagatgacaatcac-cttgatgatgtggcctctttgctgcatatctccattgaag 35065723  T
Q  104 gtatgcttttatcccacgag 123  Q
    | ||||| || |||||||||    
T  35065724 gcatgctcttgtcccacgag 35065743  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 43628410 - 43628339
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtg 75  Q
    |||||||| ||||||||||| || | |||||| ||||||||||||||||||| ||| |||||||||| ||||    
T  43628410 gagaggtggcacgaggagacttccaccttccaccttccgtttggggagatgacagtcacacttgatgatgtg 43628339  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 23047431 - 23047518
Alignment:
Q  4 gagaggtgacacgaggagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatc 91  Q
    ||||| ||||||||| ||||||| ||||||| |||| || |||||||||||| ||||||| ||| || |||||| ||| || ||||||    
T  23047431 gagagatgacacgagaagacatctagcttccgtctttcgattggggagatgagagtgacatttgttggtgtgtcatgtctgatgcatc 23047518  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 17999655 - 17999575
Alignment:
Q  19 gagacatcgagcttccatcttccgtttggggagatgatagtgacacttgatgttgtgtcgtgtttgctgcatctctccatt 99  Q
    |||||||| ||||| |||||||| | |||||||| |||| |||||||| ||| ||||||  || ||||||||||| |||||    
T  17999655 gagacatcaagctttcatcttccatatggggagaagataatgacacttaatgatgtgtccagtctgctgcatctccccatt 17999575  T

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