View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5880-12 (Length: 146)

Name: Solexa-NF5880-12
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5880-12
Solexa-NF5880-12
[»] chr6 (60 HSPs)
chr6 (8-138)||(27593025-27593155)
chr6 (8-137)||(27678998-27679127)
chr6 (8-137)||(27611008-27611137)
chr6 (8-137)||(27718385-27718514)
chr6 (8-137)||(27677620-27677749)
chr6 (8-137)||(27724851-27724980)
chr6 (8-134)||(27706411-27706537)
chr6 (10-137)||(27604711-27604838)
chr6 (8-138)||(26646531-26646661)
chr6 (8-138)||(26752499-26752629)
chr6 (8-137)||(27698500-27698629)
chr6 (8-138)||(28781191-28781321)
chr6 (8-138)||(26802494-26802624)
chr6 (8-138)||(26823892-26824022)
chr6 (10-138)||(26656043-26656171)
chr6 (10-138)||(26762014-26762142)
chr6 (8-134)||(28786330-28786456)
chr6 (8-134)||(28792451-28792577)
chr6 (8-138)||(26623028-26623158)
chr6 (8-138)||(26729006-26729136)
chr6 (8-138)||(28139593-28139723)
chr6 (8-138)||(26884215-26884347)
chr6 (8-138)||(27531202-27531332)
chr6 (8-138)||(31284340-31284470)
chr6 (8-102)||(25579771-25579865)
chr6 (8-102)||(26048897-26048991)
chr6 (8-102)||(26070066-26070160)
chr6 (8-102)||(26142917-26143011)
chr6 (10-137)||(27427612-27427739)
chr6 (8-102)||(25481794-25481888)
chr6 (8-138)||(27338070-27338200)
chr6 (8-138)||(27398810-27398940)
chr6 (8-137)||(28227002-28227131)
chr6 (8-137)||(28242856-28242985)
chr6 (34-102)||(26341975-26342043)
chr6 (11-102)||(26055981-26056072)
chr6 (11-102)||(26075951-26076042)
chr6 (8-102)||(25538592-25538686)
chr6 (37-105)||(26848741-26848809)
chr6 (38-127)||(2184980-2185069)
chr6 (7-96)||(28297760-28297849)
chr6 (7-96)||(28514224-28514313)
chr6 (22-106)||(26937160-26937244)
chr6 (8-96)||(28181166-28181254)
chr6 (8-84)||(28234616-28234692)
chr6 (10-105)||(28149991-28150086)
chr6 (37-127)||(27214498-27214588)
chr6 (37-127)||(27234640-27234730)
chr6 (8-127)||(26861668-26861784)
chr6 (37-109)||(2184369-2184441)
chr6 (8-84)||(28185418-28185494)
chr6 (38-89)||(26975134-26975185)
chr6 (10-86)||(28098426-28098502)
chr6 (40-91)||(26635774-26635825)
chr6 (40-91)||(26741740-26741791)
chr6 (8-73)||(25506979-25507044)
chr6 (38-86)||(25071741-25071789)
chr6 (40-88)||(26959250-26959298)
chr6 (37-91)||(27665169-27665223)
chr6 (11-71)||(27229287-27229347)
[»] scaffold0349 (2 HSPs)
scaffold0349 (8-137)||(3427-3557)
scaffold0349 (8-137)||(14362-14490)
[»] chr4 (8 HSPs)
chr4 (8-127)||(18679570-18679689)
chr4 (8-138)||(18731496-18731626)
chr4 (8-138)||(18655469-18655599)
chr4 (8-138)||(18724077-18724207)
chr4 (8-127)||(18699403-18699522)
chr4 (10-137)||(18073816-18073943)
chr4 (38-137)||(5090960-5091059)
chr4 (10-95)||(17989088-17989173)
[»] chr1 (3 HSPs)
chr1 (13-128)||(28164364-28164479)
chr1 (8-138)||(28127671-28127801)
chr1 (8-107)||(268380-268479)
[»] scaffold0277 (2 HSPs)
scaffold0277 (8-137)||(4677-4806)
scaffold0277 (8-138)||(13637-13767)
[»] chr8 (1 HSPs)
chr8 (8-138)||(29273775-29273905)
[»] scaffold0419 (1 HSPs)
scaffold0419 (8-138)||(7577-7707)
[»] scaffold0003 (1 HSPs)
scaffold0003 (10-137)||(59624-59751)
[»] scaffold0038 (3 HSPs)
scaffold0038 (8-137)||(27500-27629)
scaffold0038 (8-137)||(43018-43147)
scaffold0038 (8-96)||(34777-34865)
[»] chr2 (2 HSPs)
chr2 (12-91)||(3279744-3279823)
chr2 (38-91)||(17993736-17993789)
[»] scaffold0019 (1 HSPs)
scaffold0019 (8-91)||(58334-58417)
[»] scaffold1254 (1 HSPs)
scaffold1254 (8-50)||(10-52)
[»] chr5 (1 HSPs)
chr5 (25-127)||(16689080-16689182)


Alignment Details
Target: chr6 (Bit Score: 131; Significance: 3e-68; HSPs: 60)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 3e-68
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 27593155 - 27593025
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27593155 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 27593056  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
    |||||||||||||||||||||||||||||||    
T  27593055 ccctgttttgcctgttttctttggtgtggat 27593025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 27678998 - 27679127
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  27678998 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcg 27679097  T
Q  108 ccctgttttgcctgttttctttggtgtgga 137  Q
    ||  ||| ||||||||||||||||||||||    
T  27679098 cctcgttctgcctgttttctttggtgtgga 27679127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 5e-51
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 27611137 - 27611008
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  27611137 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcg 27611038  T
Q  108 ccctgttttgcctgttttctttggtgtgga 137  Q
    ||  ||||||||||||||||| || |||||    
T  27611037 cctcgttttgcctgttttcttcggcgtgga 27611008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 5e-51
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 27718514 - 27718385
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  27718514 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcg 27718415  T
Q  108 ccctgttttgcctgttttctttggtgtgga 137  Q
    ||  ||||||||||||||||| || |||||    
T  27718414 cctcgttttgcctgttttcttcggcgtgga 27718385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 27677749 - 27677620
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  27677749 ctaggatttttattgctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcg 27677650  T
Q  108 ccctgttttgcctgttttctttggtgtgga 137  Q
    ||  ||| ||||||||||||||| ||||||    
T  27677649 cctcgttctgcctgttttctttgctgtgga 27677620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 27724980 - 27724851
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  27724980 ctaggatttttattcctgtgttttctatcaactatgcctattcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcg 27724881  T
Q  108 ccctgttttgcctgttttctttggtgtgga 137  Q
    ||  ||||||||||||||||| || |||||    
T  27724880 cctcgttttgcctgttttcttcggcgtgga 27724851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 8e-47
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 27706537 - 27706411
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  27706537 ctaggatttttattcctgtgttttctatcacctatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcg 27706438  T
Q  108 ccctgttttgcctgttttctttggtgt 134  Q
    ||  ||| |||||||||| ||||||||    
T  27706437 cctcgttctgcctgttttatttggtgt 27706411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 92; E-Value: 5e-45
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 27604838 - 27604711
Alignment:
Q  10 aggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcgcc 109  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||  ||||||||||||||||||| |||||||||||||     
T  27604838 aggatttttattcctgtgttttctatcaaatatgcctcttcttccttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcg 27604739  T
Q  110 ctgttttgcctgttttctttggtgtgga 137  Q
      ||||||||||||||||||||||||||    
T  27604738 tcgttttgcctgttttctttggtgtgga 27604711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 26646531 - 26646661
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26646531 ctaggatttttattcctgtgttttctatcaactatgcctcttctaaattttgtttggacgaacttgtccacatcattcattgctacaagacaaagggtcg 26646630  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
     |  |||||||| ||||||| ||| ||||||    
T  26646631 tctcgttttgcccgttttctatggcgtggat 26646661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 26752499 - 26752629
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26752499 ctaggatttttattcctgtgttttctatcaactatgcctcttctaaattttgtttggacgaacttgtccacatcattcattgctacaagacaaagggtcg 26752598  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
     |  |||||||| ||||||| ||| ||||||    
T  26752599 tctcgttttgcccgttttctatggcgtggat 26752629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 27698629 - 27698500
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||| ||||| |||||| |||||||||||||    
T  27698629 ctaggatttttattcctgtgttttctctcaactatgcatcttcttcattttgtttggacgaacttgtccacataattcactgctacgagacaaagggtcg 27698530  T
Q  108 ccctgttttgcctgttttctttggtgtgga 137  Q
    ||  ||||||||||||||||| ||||||||    
T  27698529 cctcgttttgcctgttttcttcggtgtgga 27698500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 28781191 - 28781321
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||||||||||||||||||||||||||||||| ||||    ||||| |||||||||||||  ||||| |||||||||||||||||||| |||||    
T  28781191 ctaggatttttattcctgtgttttctatcaactatgccacttcaaaattttgcttggacgaacttgttcacattattcattgctacaagacaaaaggtcg 28781290  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
    ||  |||||||||||||||||||||||||||    
T  28781291 cctcgttttgcctgttttctttggtgtggat 28781321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 75; E-Value: 7e-35
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 26802494 - 26802624
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||    ||||| |||||||||||||  ||||| ||||||||||| ||||||||||||||    
T  26802494 ctagaatttttattcctgtgttttctatcaactatgcctcttcaaaattttgcttggacgaacttgttcacattattcattgctataagacaaagggtcg 26802593  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
    ||  || |||||| |||||||||||||||||    
T  26802594 cctcgtcttgcctattttctttggtgtggat 26802624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 75; E-Value: 7e-35
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 26823892 - 26824022
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||| |||||||||||    |||||||  |||||| ||    
T  26823892 ctaggatttttattcctgtgttttctgccaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcgcgtctacaaggaaaaggggcg 26823991  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
    ||  |||||||||||||||| ||||||||||    
T  26823992 cctcgttttgcctgttttctatggtgtggat 26824022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 26656043 - 26656171
Alignment:
Q  10 aggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcgcc 109  Q
    ||||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| |      
T  26656043 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcattgctataagacaaagggttgtt 26656142  T
Q  110 ctgttttgcctgttttctttggtgtggat 138  Q
    | |||||||||||||||| ||||||||||    
T  26656143 cggttttgcctgttttctatggtgtggat 26656171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 26762014 - 26762142
Alignment:
Q  10 aggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcgcc 109  Q
    ||||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| |      
T  26762014 aggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcattgctataagacaaagggttgtt 26762113  T
Q  110 ctgttttgcctgttttctttggtgtggat 138  Q
    | |||||||||||||||| ||||||||||    
T  26762114 cggttttgcctgttttctatggtgtggat 26762142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 28786330 - 28786456
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||||||||||||||||||||||||||| ||| | ||    ||||| |||||||||||||  ||||| |||||||||||||||||||| |||||    
T  28786330 ctaggatttttattcctgtgttttctatcaactacgccacatcaaaattttgcttggacgaacttgttcacattattcattgctacaagacaaaaggtcg 28786429  T
Q  108 ccctgttttgcctgttttctttggtgt 134  Q
    ||  |||||||||||||||||||||||    
T  28786430 cctcgttttgcctgttttctttggtgt 28786456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 28792451 - 28792577
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||||||||||||||||||||||||||| ||| | ||    ||||| |||||||||||||  ||||| |||||||||||||||||||| |||||    
T  28792451 ctaggatttttattcctgtgttttctatcaactacgccacatcaaaattttgcttggacgaacttgttcacattattcattgctacaagacaaaaggtcg 28792550  T
Q  108 ccctgttttgcctgttttctttggtgt 134  Q
    ||  |||||||||||||||||||||||    
T  28792551 cctcgttttgcctgttttctttggtgt 28792577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 26623028 - 26623158
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    ||||||||||||||||||||||||||  ||||||||| | |||||| ||||||||||| ||||||| |||||||||||| |||||||| |||||||||||    
T  26623028 ctaggatttttattcctgtgttttctcccaactatgcatattcttcattttgtttggatgaacttgtccacatcattcactgctacaaaacaaagggtcg 26623127  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
     |  |||||||| || |||| ||| ||||||    
T  26623128 tctcgttttgcccgtcttctatggcgtggat 26623158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 26729006 - 26729136
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    ||||||||||||||||||||||||||  ||||||||| | |||||| ||||||||||| ||||||| |||||||||||| |||||||| |||||||||||    
T  26729006 ctaggatttttattcctgtgttttctcccaactatgcatattcttcattttgtttggatgaacttgtccacatcattcactgctacaaaacaaagggtcg 26729105  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
     |  |||||||| || |||| ||| ||||||    
T  26729106 tctcgttttgcccgtcttctatggcgtggat 26729136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 28139593 - 28139723
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||| | |||| ||| ||||||||  |    
T  28139593 ctaggattttcatccctgtgttttccatcaactatgcctcttcttcgttttgcttggacgaacttgtccacatcattgactgcttcaacacaaagggatg 28139692  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
        |||||||||||||||| ||||||||||    
T  28139693 tttggttttgcctgttttctatggtgtggat 28139723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 26884215 - 26884347
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccaca--tcattcattgctacaagacaaagggt 105  Q
    |||| |||||||||||  | ||||||| ||||||||| |||||||| ||||||||||||||||||| |||||  ||||||| |||||| |||||||||||    
T  26884215 ctagaatttttattccaatattttctaccaactatgcatcttcttcattttgtttggacgaacttgtccacatgtcattcactgctacgagacaaagggt 26884314  T
Q  106 cgccctgttttgcctgttttctttggtgtggat 138  Q
    ||||  ||||||||||||||  |||||||||||    
T  26884315 cgcctcgttttgcctgtttttgttggtgtggat 26884347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 27531332 - 27531202
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||||||||| || ||||||   |||||||| |||||||| |||||||||||||||||||  ||||||| |||||||||| | ||||||||| |    
T  27531332 ctaggatttttattcccgtattttctgaaaactatgcatcttcttcattttgtttggacgaacttgttcacatcactcattgctacgatacaaagggttg 27531233  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
     | |||||||||||||||  |||||||||||    
T  27531232 tcttgttttgcctgtttttattggtgtggat 27531202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 31284340 - 31284470
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    ||||||||||||| || |||||||||  ||||||||||||||| |||||||||||||||||||||| |||||||||||| |  || |||  ||| |||||    
T  31284340 ctaggatttttatccccgtgttttctgccaactatgcctcttcgtcgttttgtttggacgaacttgtccacatcattcacttgtataagcaaaatggtcg 31284439  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
    ||  |||||||| ||||||||||| ||||||    
T  31284440 cctcgttttgcccgttttctttggcgtggat 31284470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 25579771 - 25579865
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaag 102  Q
    ||||||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||    
T  25579771 ctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 25579865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 26048897 - 26048991
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaag 102  Q
    ||||||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||    
T  26048897 ctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 26048991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 26070066 - 26070160
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaag 102  Q
    ||||||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||    
T  26070066 ctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 26070160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 26142917 - 26143011
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaag 102  Q
    ||||||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||    
T  26142917 ctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 26143011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 27427739 - 27427612
Alignment:
Q  10 aggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcgcc 109  Q
    |||||||| |||||  | ||||||  ||||||||| |||||||| | ||||||||||  ||||| |||||||||||| |||||||| || |||||| |||    
T  27427739 aggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaaccaagggttgcc 27427640  T
Q  110 ctgttttgcctgttttctttggtgtgga 137  Q
      ||||||||||||||||||||||||||    
T  27427639 tcgttttgcctgttttctttggtgtgga 27427612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 25481794 - 25481888
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaag 102  Q
    ||||||||| ||||||  | ||||||  ||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||    
T  25481794 ctaggatttgtattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 25481888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 27338200 - 27338070
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||| |||||  | ||||||   |||||||| |||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||| |||| |    
T  27338200 ctaggattttgattcccatattttctgcaaactatgcatcttcttcattttgcttggacgaacttgtccacatcattcactgctacaagacaaggggttg 27338101  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
      | |||||||||||||||| ||||| ||||    
T  27338100 ttcggttttgcctgttttctatggtgcggat 27338070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 27398940 - 27398810
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||| |||||  | ||||||   |||||||| |||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||| |||| |    
T  27398940 ctaggattttgattcccatattttctgcaaactatgcatcttcttcattttgcttggacgaacttgtccacatcattcactgctacaagacaaggggttg 27398841  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
      | |||||||||||||||| ||||| ||||    
T  27398840 ttcggttttgcctgttttctatggtgcggat 27398810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 28227002 - 28227131
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||| |||||||| || |||||||| ||||| |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||  |||  | ||    
T  28227002 ctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcattgcttcaaggaaaatcggcg 28227101  T
Q  108 ccctgttttgcctgttttctttggtgtgga 137  Q
    || |||||||||  |||||| || ||||||    
T  28227102 ccttgttttgccaattttctatgatgtgga 28227131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 28242856 - 28242985
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||| |||||||| || |||||||| ||||| |||||||| ||||| ||||||||||||| |||||||||||| |||| ||||| ||| || ||    
T  28242856 ctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgctgcaagaaaaatggacg 28242955  T
Q  108 ccctgttttgcctgttttctttggtgtgga 137  Q
    ||  ||||||||  |||||| || ||||||    
T  28242956 cctagttttgccaattttctatgatgtgga 28242985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 26342043 - 26341975
Alignment:
Q  34 atcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaag 102  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||    
T  26342043 atcaactatgcttcttcttcgttttgtttggacgaacttgtccacatcattcattgcttcaaggcaaag 26341975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 26055981 - 26056072
Alignment:
Q  11 ggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaag 102  Q
    |||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||| ||||||    
T  26055981 ggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaacacaaag 26056072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 26075951 - 26076042
Alignment:
Q  11 ggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaag 102  Q
    |||||||||||||  | ||||||  ||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||| ||||||    
T  26075951 ggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaacacaaag 26076042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 25538592 - 25538686
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaag 102  Q
    |||| |||||||||||  | ||||||  ||||||||| |||||||| ||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  25538592 ctagaatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccagatcattcactgctacaagacaaag 25538686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 26848741 - 26848809
Alignment:
Q  37 aactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggt 105  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||  |||||||    
T  26848741 aactatgccacttcttcgttttgtttggacgaacttgtccacatcattcattgctccaaggaaaagggt 26848809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 2184980 - 2185069
Alignment:
Q  38 actatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcgccctgttttgcctgttttct 127  Q
    ||||||| |||||||| ||||||||||||||||||| ||| ||||||| ||||| |||| ||||||| ||||| ||| |||| |||||||    
T  2184980 actatgcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttct 2185069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 28297849 - 28297760
Alignment:
Q  7 actaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaag 96  Q
    ||||||||||| |||||||| || |||| ||| ||||| |||||||| ||||| ||||||||||||| |||||||||||| |||| ||||    
T  28297849 actaggattttcattcctgtcttatctaccaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaag 28297760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 28514224 - 28514313
Alignment:
Q  7 actaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaag 96  Q
    ||||||||||| |||||||| || |||| ||| ||||| |||||||| ||||| ||||||||||||| |||||||||||| |||| ||||    
T  28514224 actaggattttcattcctgtcttatctaccaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaag 28514313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 26937160 - 26937244
Alignment:
Q  22 cctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtc 106  Q
    ||||| || ||||||||||||||| ||||||| ||||||||||||||||||| ||||||| || | |||| ||||||||| ||||    
T  26937160 cctgtattctctatcaactatgccacttcttcattttgtttggacgaacttgtccacatcgttgactgcttcaagacaaaaggtc 26937244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 28181166 - 28181254
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaag 96  Q
    |||||||||| ||||| || || |||||||| ||||| |||||||| ||||| ||||||||||||| |||||||||||| |||| ||||    
T  28181166 ctaggattttcattcccgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaag 28181254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 28234616 - 28234692
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcatt 84  Q
    |||||||||| |||||||| || |||||||| ||||| |||||||| ||||| ||||||||||||| ||||||||||    
T  28234616 ctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcatt 28234692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 28149991 - 28150086
Alignment:
Q  10 aggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggt 105  Q
    |||||||| |||||  | || |||||||||||| | |||||||| ||||||||||||||||||| |||||| ||||| |||| |||| ||||||||    
T  28149991 aggattttcattccaatcttctctatcaactatacttcttcttcattttgtttggacgaacttgtccacattattcactgcttcaaggcaaagggt 28150086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 27214498 - 27214588
Alignment:
Q  37 aactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcgccctgttttgcctgttttct 127  Q
    ||||||||  ||||||| ||||||||||||||||||| |||||||| |||||||| ||||  ||| ||||||| |||| | ||||||||||    
T  27214498 aactatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaaggaaaaaggtcgccttgttctacctgttttct 27214588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 27234730 - 27234640
Alignment:
Q  37 aactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcgccctgttttgcctgttttct 127  Q
    ||||||||  ||||||| ||||||||||||||||||| |||||||| |||||||| ||||  ||| ||||||| |||| | ||||||||||    
T  27234730 aactatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaaggaaaaaggtcgccttgttctacctgttttct 27234640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 26861668 - 26861784
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||| ||||| |||||||||||||||  ||||||||||||||| || ||||||||||| ||||||| ||| |||||| |   || ||||  |||||||||    
T  26861668 ctagaattttcattcctgtgttttctgccaactatgcctcttcgtcattttgtttggatgaacttgtccaaatcattaa---ctgcaaggaaaagggtcg 26861764  T
Q  108 ccctgttttgcctgttttct 127  Q
    |   ||||||||||||||||    
T  26861765 cgtcgttttgcctgttttct 26861784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 2184369 - 2184441
Alignment:
Q  37 aactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcgcc 109  Q
    |||||||| |||||||| ||||||||||||||||||| ||||||||||| || || |||| ||||||| ||||    
T  2184369 aactatgcttcttcttcattttgtttggacgaacttgtccacatcattcgttactccaagtcaaagggacgcc 2184441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 28185418 - 28185494
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcatt 84  Q
    |||||||||| ||||| || || |||||||| ||||| |||||||| ||||| ||||||||||||| ||||||||||    
T  28185418 ctaggattttcattcccgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcatt 28185494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 26975134 - 26975185
Alignment:
Q  38 actatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattg 89  Q
    ||||||| |||||||| ||||||||||||||||||| |||||||||||||||    
T  26975134 actatgcttcttcttcattttgtttggacgaacttgtccacatcattcattg 26975185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 28098502 - 28098426
Alignment:
Q  10 aggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattca 86  Q
    |||||||| ||||| || || ||||  |||||||| ||||||| |||||||||||| ||||||| ||||||||||||    
T  28098502 aggattttaattccggtcttctctaagaactatgcttcttctttgttttgtttggatgaacttgtccacatcattca 28098426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 26635774 - 26635825
Alignment:
Q  40 tatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgct 91  Q
    ||||| ||||||| |||||||||||| ||||||| |||||||||||||||||    
T  26635774 tatgcttcttctttgttttgtttggatgaacttgtccacatcattcattgct 26635825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 26741740 - 26741791
Alignment:
Q  40 tatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgct 91  Q
    ||||| ||||||| |||||||||||| ||||||| |||||||||||||||||    
T  26741740 tatgcttcttctttgttttgtttggatgaacttgtccacatcattcattgct 26741791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 25507044 - 25506979
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttg 73  Q
    |||||||||||||||| ||  ||||||||||||||||||||||    ||||||||||| |||||||    
T  25507044 ctaggatttttattccggttctttctatcaactatgcctcttcaaaattttgtttggaggaacttg 25506979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 25071741 - 25071789
Alignment:
Q  38 actatgcctcttcttcgttttgtttggacgaacttgaccacatcattca 86  Q
    ||||||| |||||||| |||||||| |||||||||| ||||||||||||    
T  25071741 actatgcttcttcttcattttgtttagacgaacttgtccacatcattca 25071789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 26959250 - 26959298
Alignment:
Q  40 tatgcctcttcttcgttttgtttggacgaacttgaccacatcattcatt 88  Q
    ||||| ||||||||||||| |||||| ||||||| ||||||||||||||    
T  26959250 tatgcttcttcttcgttttatttggatgaacttgtccacatcattcatt 26959298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 27665223 - 27665169
Alignment:
Q  37 aactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgct 91  Q
    ||||||||  ||||||| |||||||| || ||||||| |||||||||||||||||    
T  27665223 aactatgctacttcttcattttgtttagatgaacttgtccacatcattcattgct 27665169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 27229287 - 27229347
Alignment:
Q  11 ggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaact 71  Q
    |||||||||||||  | ||||||  ||||||||| |||||||| ||||||||| |||||||    
T  27229287 ggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgaacgaact 27229347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 95; Significance: 8e-47; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 95; E-Value: 8e-47
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 3557 - 3427
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaac-tatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtc 106  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  3557 ctaggatttttattcctgtgttttctatcaacctatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtc 3458  T
Q  107 gccctgttttgcctgttttctttggtgtgga 137  Q
    |||  ||| |||||||||| |||||||||||    
T  3457 gcctcgttctgcctgttttatttggtgtgga 3427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 14490 - 14362
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  14490 ctaggatttttattcctgtgttttctatcaactatgcct-ttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcg 14392  T
Q  108 ccctgttttgcctgttttctttggtgtgga 137  Q
    ||  ||||||||||||||||| || |||||    
T  14391 cctcgttttgcctgttttcttcggcgtgga 14362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 5e-45; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 5e-45
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 18679689 - 18679570
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  18679689 ctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcg 18679590  T
Q  108 ccctgttttgcctgttttct 127  Q
     | |||||||||||||||||    
T  18679589 tcttgttttgcctgttttct 18679570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 18731626 - 18731496
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  18731626 ctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcatgcactgctacaagacaaagggtcg 18731527  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
     | ||||||||||||||||| ||| ||||||    
T  18731526 tcttgttttgcctgttttctatggcgtggat 18731496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 5e-42
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 18655599 - 18655469
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||||    
T  18655599 ctaggatctttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccgcatcattcactgctacaagacaaagggtcg 18655500  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
     |  ||||| |||||||||| ||| ||||||    
T  18655499 tctcgtttttcctgttttctatggcgtggat 18655469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 5e-42
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 18724207 - 18724077
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| || ||||||||||||||||||||    
T  18724207 ctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttgaacgaacttgtccacatcatgcactgctacaagacaaagggtcg 18724108  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
     | ||||||||||||||||| ||| ||||||    
T  18724107 tcttgttttgcctgttttctatggcgtggat 18724077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 18699522 - 18699403
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||| |||||||||||||| |||||    
T  18699522 ctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgttcacatcattcactgctacaagacaaaaggtcg 18699423  T
Q  108 ccctgttttgcctgttttct 127  Q
     |  ||||||||||||||||    
T  18699422 tctcgttttgcctgttttct 18699403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 18073816 - 18073943
Alignment:
Q  10 aggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcgcc 109  Q
    |||||||| |||||  | ||||||  ||||||||| |||||||| | ||||||||||  ||||| |||||||||||| |||||||| || |||||| |||    
T  18073816 aggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaaccaagggttgcc 18073915  T
Q  110 ctgttttgcctgttttctttggtgtgga 137  Q
      ||||||||||||||||||||||||||    
T  18073916 tcgttttgcctgttttctttggtgtgga 18073943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 5091059 - 5090960
Alignment:
Q  38 actatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcgccctgttttgcctgttttctttggtgtgga 137  Q
    ||||||| ||||||||||||||||| || ||||||| ||| || ||||| |||| ||||  ||| ||| |||  ||||||||| |||||| |||||||||    
T  5091059 actatgcttcttcttcgttttgtttagatgaacttgtccatattattcactgctccaaggaaaatggttgcctggttttgcctattttctatggtgtgga 5090960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 17989173 - 17989088
Alignment:
Q  10 aggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaa 95  Q
    |||||||| |||||  | ||||||  ||||||||| |||||||| | ||||||||||  ||||| |||||||||||| ||||||||    
T  17989173 aggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaa 17989088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 5e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 5e-45
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 28164479 - 28164364
Alignment:
Q  13 atttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcgccctg 112  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||  |    
T  28164479 atttttattcctgtgttatctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctag 28164380  T
Q  113 ttttgcctgttttctt 128  Q
    ||||||||||||||||    
T  28164379 ttttgcctgttttctt 28164364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 28127801 - 28127671
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||| |||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||  ||||||||||| ||||||||||||||||||||    
T  28127801 ctagaatttttattcctgtattttctaccaactatgcctcttcttcattttgtttggacgaacttgtgcacatcattcactgctacaagacaaagggtcg 28127702  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
    ||  |||||||||||||||||||| ||||||    
T  28127701 cctagttttgcctgttttctttggcgtggat 28127671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 268479 - 268380
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| |||||||||    
T  268479 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagaaaaagggtcg 268380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 90; Significance: 7e-44; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 4806 - 4677
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  4806 ctaggatttttattcctgtgttttctatcttctatgccttttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcg 4707  T
Q  108 ccctgttttgcctgttttctttggtgtgga 137  Q
    ||  ||||||||||||||||| || |||||    
T  4706 cctcgttttgcctgttttcttcggcgtgga 4677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 13767 - 13637
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    ||||| |||||||||||||  ||||| |||||||||||||||||||| |||||    
T  13767 ctaggatttttattcctgtgttttctatcaactacgccacttcaaaattttgcttggacgaacttgttcacattattcattgctacaagacaaaaggtcg 13668  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
    ||  |||||||||||||||||||||||||||    
T  13667 cctcgttttgcctgttttctttggtgtggat 13637  T

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Target: chr8 (Bit Score: 87; Significance: 5e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 5e-42
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 29273905 - 29273775
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  29273905 ctagaatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcg 29273806  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
     |   |||||||||| |||| ||| ||||||    
T  29273805 tctcattttgcctgtcttctatggcgtggat 29273775  T

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Target: scaffold0419 (Bit Score: 75; Significance: 7e-35; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 75; E-Value: 7e-35
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 7577 - 7707
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    ||||| |||||||||||||  ||||| |||||||||||||||||| | |||||    
T  7577 ctaggatttttattcctgtgttttctatcaactacgccacttcaaaattttgcttggacgaacttgttcacattattcattgctacaagacagaaggtcg 7676  T
Q  108 ccctgttttgcctgttttctttggtgtggat 138  Q
    ||  |||||||||||||||||||||||||||    
T  7677 cctcgttttgcctgttttctttggtgtggat 7707  T

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Target: scaffold0003 (Bit Score: 56; Significance: 1e-23; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 59624 - 59751
Alignment:
Q  10 aggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcgcc 109  Q
    |||||||| |||||  | ||||||  ||||||||| |||||||| | ||||||||||  ||||| |||||||||||| |||||||| || |||||| |||    
T  59624 aggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaaccaagggttgcc 59723  T
Q  110 ctgttttgcctgttttctttggtgtgga 137  Q
      ||||||||||||||||||||||||||    
T  59724 tcgttttgcctgttttctttggtgtgga 59751  T

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Target: scaffold0038 (Bit Score: 54; Significance: 2e-22; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 27500 - 27629
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||| |||||||| || |||||||| ||||| |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||  |||  | ||    
T  27500 ctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcattgcttcaaggaaaatcggcg 27599  T
Q  108 ccctgttttgcctgttttctttggtgtgga 137  Q
    || |||||||||  |||||| || ||||||    
T  27600 ccttgttttgccaattttctatgatgtgga 27629  T

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Target: scaffold0038; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 43018 - 43147
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcg 107  Q
    |||||||||| |||||||| || |||||||| ||||| |||||||| ||||| ||||||||||||| |||||||||||| |||| ||||| ||| || ||    
T  43018 ctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgctgcaagaaaaatggacg 43117  T
Q  108 ccctgttttgcctgttttctttggtgtgga 137  Q
    ||  ||||||||  |||||| || ||||||    
T  43118 cctagttttgccaattttctatgatgtgga 43147  T

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Target: scaffold0038; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 34777 - 34865
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaag 96  Q
    |||||||||| |||||||| || |||||||| ||||| |||||||| ||||| ||||||||||||| |||||||||||| |||| ||||    
T  34777 ctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaag 34865  T

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Target: chr2 (Bit Score: 48; Significance: 9e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 9e-19
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 3279744 - 3279823
Alignment:
Q  12 gatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgct 91  Q
    |||||||||||| || || |||||||||||||| ||||||   ||||||||||||||||||| |||||||||||||||||    
T  3279744 gatttttattccggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattcattgct 3279823  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 17993789 - 17993736
Alignment:
Q  38 actatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgct 91  Q
    ||||||| |||||||| |||||||| |||||||||| |||||||||||| ||||    
T  17993789 actatgcttcttcttcattttgtttagacgaacttgtccacatcattcaatgct 17993736  T

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Target: scaffold0019 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 58417 - 58334
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgct 91  Q
    |||||||||| ||||| || || |||||||||||||| |||||||| ||||| ||| ||||||||| |||||||||||| ||||    
T  58417 ctaggattttcattcccgtcttgtctatcaactatgcttcttcttcattttgcttgaacgaacttgtccacatcattcactgct 58334  T

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Target: scaffold1254 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 52 - 10
Alignment:
Q  8 ctaggatttttattcctgtgttttctatcaactatgcctcttc 50  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  52 ctaggatttttattcctgtgttttctatcaactacgccacttc 10  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 16689080 - 16689182
Alignment:
Q  25 gtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcgccctgttttgcctgttt 124  Q
    ||||||||||  |||||||| | ||| |||||||||||||| ||||||| | |||||||| || ||| ||   |||| ||||| |  |||||||||||||    
T  16689080 gtgttttctaagaactatgcattttcctcgttttgtttggatgaacttgtcaacatcattgatggcttcagtgcaaaaggtcggctagttttgcctgttt 16689179  T
Q  125 tct 127  Q
    |||    
T  16689180 tct 16689182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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