View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5880-15 (Length: 141)
Name: Solexa-NF5880-15
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5880-15 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 125; Significance: 9e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 9e-65
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 6371071 - 6371211
Alignment:
| Q |
1 |
caaaggggatttgttgtattcagcgaactacaagactaaactcttatgatttaattaatatctcaggtgtaagaaataaaaaagtttaaaccaatttttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
6371071 |
caaaggggatttgttgtattcagcgaactacaagactaaactcttatgatttaattaatatctcgagtgtaagaaataaaaaagttttaaccaatttttt |
6371170 |
T |
|
| Q |
101 |
atttgattttgttttaaactctttgataataattacaaaaa |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6371171 |
atttgattttgttttaaactctttgataataattacaaaaa |
6371211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University