View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5880-17 (Length: 139)
Name: Solexa-NF5880-17
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5880-17 |
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Alignment Details
Target: chr5 (Bit Score: 72; Significance: 4e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 34508893 - 34509022
Alignment:
| Q |
1 |
agagagagaaccaaaccgatattttgaaattaaagaaatagcatacaattaaaaataaaacagattaactacacttgattaacnnnnnnnnnnggtgaat |
100 |
Q |
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| T |
34508893 |
agagacagaaccaaacccatattttgaaattaaagaaatagcatagaattaaaaataaaacaaattaactacagttgattaacaaaaaaaaaaggtgcat |
34508992 |
T |
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| Q |
101 |
aaaatggattacctggagagaaaaatccaa |
130 |
Q |
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| T |
34508993 |
agaatggattacctggagagaaaaatccaa |
34509022 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 44784938 - 44784974
Alignment:
| Q |
94 |
ggtgaataaaatggattacctggagagaaaaatccaa |
130 |
Q |
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| T |
44784938 |
ggtgaatagaatggattacctggagagaaaaatccaa |
44784974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 45110415 - 45110360
Alignment:
| Q |
26 |
gaaattaaagaaatagcatacaattaaaaataaaacagattaactacacttgatta |
81 |
Q |
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| T |
45110415 |
gaaattaaaaaagtagcatacaataaaaaataaaagaaattaattacaattgatta |
45110360 |
T |
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