View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5880-21 (Length: 135)

Name: Solexa-NF5880-21
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5880-21
Solexa-NF5880-21
[»] chr5 (1 HSPs)
chr5 (1-112)||(10560700-10560811)
[»] chr7 (1 HSPs)
chr7 (41-105)||(26159132-26159195)
[»] chr4 (2 HSPs)
chr4 (25-61)||(55780962-55780998)
chr4 (25-61)||(55845142-55845178)
[»] chr1 (1 HSPs)
chr1 (25-61)||(19852309-19852345)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 1e-54; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 10560811 - 10560700
Alignment:
Q  1 caaagggatatagcctaaaataggtgaaagaaaaatgaagcaattgttttcttttaaacatgacacttcgacattgggcaagtttttgcaagtgctcttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10560811 caaagggatatagcctaaaataggtgaaagaaaaatgaagcaattgttttcttttaaacatgacacttcgacattgggcaagtttttgcaagtgctcttg 10560712  T
Q  101 atcaatacctta 112  Q
    ||||| ||||||    
T  10560711 atcaacacctta 10560700  T

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Target: chr7 (Bit Score: 45; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 26159132 - 26159195
Alignment:
Q  41 caattgttttcttttaaacatgacacttcgacattgggcaagtttttgcaagtgctcttgatcaa 105  Q
    ||||||||||||||||||||| |||||| |||| ||||||||| |||||||||||||||||||||    
T  26159132 caattgttttcttttaaacat-acacttggacactgggcaagtgtttgcaagtgctcttgatcaa 26159195  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 55780962 - 55780998
Alignment:
Q  25 tgaaagaaaaatgaagcaattgttttcttttaaacat 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  55780962 tgaaagaaaaatgaagcaattgttttcttttaaacat 55780998  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 55845142 - 55845178
Alignment:
Q  25 tgaaagaaaaatgaagcaattgttttcttttaaacat 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  55845142 tgaaagaaaaatgaagcaattgttttcttttaaacat 55845178  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 19852309 - 19852345
Alignment:
Q  25 tgaaagaaaaatgaagcaattgttttcttttaaacat 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  19852309 tgaaagaaaaatgaagcaattgttttcttttaaacat 19852345  T

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