View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5880-23 (Length: 131)
Name: Solexa-NF5880-23
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5880-23 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 3e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 3e-61
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 46731213 - 46731095
Alignment:
| Q |
13 |
ttggaaattggaattgcatttttgtaattgtagtgtcatgatatgataatgtttgacattcttaatatatttttaggtgctatgagattgattggagatc |
112 |
Q |
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| T |
46731213 |
ttggaaattggaattgcatttttgtaattgtagtgtcatgatatgataatgtttgacattcttaatatatttttaggtgctatgagattgattggagatc |
46731114 |
T |
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| Q |
113 |
aaggatcatagccgtggag |
131 |
Q |
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| T |
46731113 |
aaggatcatagccgtggag |
46731095 |
T |
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Target: chr2 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 7927623 - 7927548
Alignment:
| Q |
49 |
catgatatgataatgtttgacattcttaatatatttttaggtgctatgagattgattggagatcaaggatcatagc |
124 |
Q |
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| T |
7927623 |
catgatatgataatgtttgacatttgaaagttctttttaggtcctatgagattgactggagatcaaggatcatagc |
7927548 |
T |
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