View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5880-26 (Length: 128)

Name: Solexa-NF5880-26
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5880-26
Solexa-NF5880-26
[»] chr4 (1 HSPs)
chr4 (27-104)||(26424986-26425063)
[»] chr5 (1 HSPs)
chr5 (29-76)||(2883952-2883999)
[»] chr3 (2 HSPs)
chr3 (29-76)||(38856997-38857044)
chr3 (24-65)||(35963401-35963442)
[»] chr2 (1 HSPs)
chr2 (24-76)||(28584963-28585015)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 26424986 - 26425063
Alignment:
Q  27 tctaattttttatatttatctttcaccaaataacattctccatttattttnnnnnnntaaataaatagaaaggatcct 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  26424986 tctaattttttatatttatctttcaccaaataacattctccatttattttaaaaaaataaataaatagaaaggatcct 26425063  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 2883952 - 2883999
Alignment:
Q  29 taattttttatatttatctttcaccaaataacattctccatttatttt 76  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||||||||    
T  2883952 taattttttgtatatatctttcaccaaatgacattctccatttatttt 2883999  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 38856997 - 38857044
Alignment:
Q  29 taattttttatatttatctttcaccaaataacattctccatttatttt 76  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||||||||    
T  38856997 taattttttttatttatctctcaccaaatgacattctccatttatttt 38857044  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 35963401 - 35963442
Alignment:
Q  24 ctatctaattttttatatttatctttcaccaaataacattct 65  Q
    ||||||| |||||| ||||||||| |||||||||||||||||    
T  35963401 ctatctacttttttgtatttatctctcaccaaataacattct 35963442  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 28585015 - 28584963
Alignment:
Q  24 ctatctaattttttatatttatctttcaccaaataacattctccatttatttt 76  Q
    ||||||| |||||  ||| ||||||||||||||| ||||||| ||||||||||    
T  28585015 ctatctactttttggtatctatctttcaccaaatgacattcttcatttatttt 28584963  T

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