View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5880-3 (Length: 254)
Name: Solexa-NF5880-3
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5880-3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 40454388 - 40454641
Alignment:
| Q |
1 |
gatgaaccgttaccatagtaaacctaaagaggttgatcagattgaagatcaaaatgaacacaccaatgaatttagcgatgttgtgaagcacaatgaagac |
100 |
Q |
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| T |
40454388 |
gatgaaccgttaccatagtaaacataaagaggttgatcagattgaagatcaaaatgaacacaccaatgagtttagtgatgttgtgaagcacaatgaagac |
40454487 |
T |
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| Q |
101 |
actgagagtgatgatgaagacaccaaggttgatgctaagctcaagaaacatacaagacgaaaacagagaaagaaatatagaaacctacgaaggataactt |
200 |
Q |
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| T |
40454488 |
aatgagagtgatgatgaagacaccaaggttgatgctaagctcaagaaacataaaagacgaaaacagagaaagaaatatagaaacctacgaaggataactt |
40454587 |
T |
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| Q |
201 |
taactttgctgtgagttacggttggacattaaaatagttttggatgggacaaat |
254 |
Q |
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| T |
40454588 |
taactttgttgtgagttacggttagacattaaaatagttttggaagggacaaat |
40454641 |
T |
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