View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5880-30 (Length: 124)
Name: Solexa-NF5880-30
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5880-30 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 3e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 3e-61
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 28716709 - 28716831
Alignment:
| Q |
2 |
taggtggaggaagtgcttaccattcagagttatctgccatcatgagggccactgagattgctttcagtcgaggttggaggaatgtatggattgaaacaga |
101 |
Q |
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| T |
28716709 |
taggtggaggaagtgcttaccattcagagttatctgccatcatgagagccactgagattgctttcagtcgaggttggaggaatgtatggattgaaacaga |
28716808 |
T |
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| Q |
102 |
ctcttcgttagtggtcatggctt |
124 |
Q |
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| T |
28716809 |
ctcttcgttagtggtcatggctt |
28716831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 3e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 3e-61
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 16490341 - 16490463
Alignment:
| Q |
2 |
taggtggaggaagtgcttaccattcagagttatctgccatcatgagggccactgagattgctttcagtcgaggttggaggaatgtatggattgaaacaga |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16490341 |
taggtggaggaagtgcttaccattcagagttatctgccatcatgagagccactgagattgctttcagtcgaggttggaggaatgtatggattgaaacaga |
16490440 |
T |
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| Q |
102 |
ctcttcgttagtggtcatggctt |
124 |
Q |
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||||||||||||||||||||||| |
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| T |
16490441 |
ctcttcgttagtggtcatggctt |
16490463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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