View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5880-35 (Length: 110)
Name: Solexa-NF5880-35
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5880-35 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 95; Significance: 5e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 5e-47
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 10560020 - 10560122
Alignment:
| Q |
8 |
attttaatgtattaatccatcattcatgtaacatcaagtatatatatttgatgaatgcaatactggacttgttatattatcaatacttttgtcgcatgct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
10560020 |
attttaatgtattaatccatcattcatgtaacatcaagtatatatatttgatgaatgcaatactggacttattatattatcaatacttttgtcacatgct |
10560119 |
T |
|
| Q |
108 |
cca |
110 |
Q |
| |
|
||| |
|
|
| T |
10560120 |
cca |
10560122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 9843078 - 9842989
Alignment:
| Q |
8 |
attttaatgtattaatccatcattcatgtaacatcaagtatatatatttgatgaatgcaatactggacttgttatattatcaatacttttgt |
99 |
Q |
| |
|
|||| |||| || |||||||||||||||||| |||||| |||||| || |||||||||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
9843078 |
atttgaatgcatcaatccatcattcatgtaatatcaagcatatat--ttaatgaatgcaatagtggacttattatattatcaatatttttgt |
9842989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 9825833 - 9825907
Alignment:
| Q |
8 |
attttaatgtattaatccatcattcatgtaacatcaagtatatatatttgatgaatgcaatactggacttgttatat |
84 |
Q |
| |
|
|||| |||| || |||||||||||||||||| |||||| |||||||| |||||||||||| ||| ||| |||||| |
|
|
| T |
9825833 |
atttgaatgcatcaatccatcattcatgtaatatcaag--catatatttaatgaatgcaatagtgggcttattatat |
9825907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University