View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5880-38 (Length: 89)
Name: Solexa-NF5880-38
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5880-38 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 87; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 3e-42
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 46730939 - 46731025
Alignment:
| Q |
3 |
aaattacaggagttagcactgttgtctacaatacaaaatttaataacaattctatacgaatcctatacggggattaataactttttc |
89 |
Q |
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| T |
46730939 |
aaattacaggagttagcactgttgtctacaatacaaaatttaataacaattctatacgaatcctatacggggattaataactttttc |
46731025 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 7927389 - 7927470
Alignment:
| Q |
6 |
ttacaggagttagcactgttgtctacaatacaaaatttaataacaattctatacgaatcctatacggggattaataactttt |
87 |
Q |
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| T |
7927389 |
ttacaggacttatcactgttgactacaatctaaaatttcataacaattctataagtatcctataagggggttaatagctttt |
7927470 |
T |
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