View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5880-4 (Length: 227)
Name: Solexa-NF5880-4
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5880-4 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 34322369 - 34322149
Alignment:
| Q |
1 |
agggtgtgggtaattatcattttacaagccagttttataagggttgtgttaggttatacctaaattcaaatatagtattcataatctattgagtccagtc |
100 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
34322369 |
agggtgtgggtaatcatcattttataagccagttttataagggttgtgttaggttatacctaaattcaaatataatattcatgatctattgagtc----- |
34322275 |
T |
|
| Q |
101 |
cacctcatattagatcatccgttattgaacctcccaaatcatgcttcagttgtccagtcctgaacaagagggaatatgttaagtgtttcaaacaaaatac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||| || ||||||| ||| ||||||||| | |
|
|
| T |
34322274 |
-acctcatattagatcatccgttattgaacctctcaaattatgcttcagctgtccagtcctgaacacgagggtatgtgttaagcgttccaaacaaaagat |
34322176 |
T |
|
| Q |
201 |
cccataagaaactgtgggtaaaagatg |
227 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
34322175 |
cctataagaaactgtgggtaaaagatg |
34322149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University