View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5880-5 (Length: 206)

Name: Solexa-NF5880-5
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5880-5
Solexa-NF5880-5
[»] chr5 (2 HSPs)
chr5 (8-63)||(39040027-39040082)
chr5 (128-165)||(39039925-39039962)
[»] chr4 (2 HSPs)
chr4 (8-61)||(23127200-23127253)
chr4 (128-190)||(23127321-23127381)
[»] chr1 (4 HSPs)
chr1 (8-63)||(47926515-47926570)
chr1 (8-57)||(50372992-50373042)
chr1 (128-195)||(47926635-47926706)
chr1 (157-190)||(30721793-30721826)
[»] chr2 (2 HSPs)
chr2 (128-165)||(2020255-2020292)
chr2 (28-61)||(2020360-2020393)


Alignment Details
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 39040082 - 39040027
Alignment:
Q  8 aaaacaaagataataatatgtttaccaaaaagtaaattaaatttgacaaaggacct 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39040082 aaaacaaagataataatatgtttaccaaaaagtaaattaaatttgacaaaggacct 39040027  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 39039962 - 39039925
Alignment:
Q  128 caaaaaattactatctttctctcttctcaatttctctt 165  Q
    |||||||||||||||||| |||||||||||||||||||    
T  39039962 caaaaaattactatctttttctcttctcaatttctctt 39039925  T

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Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 23127200 - 23127253
Alignment:
Q  8 aaaacaaagataataatatgtttaccaaaaagtaaattaaatttgacaaaggac 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23127200 aaaacaaagataataatatgtttaccaaaaagtaaattaaatttgacaaaggac 23127253  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 23127321 - 23127381
Alignment:
Q  128 caaaaaattactatctttctctcttctcaatttctcttataccaaaccataaatcaaatctac 190  Q
    |||||||||| |||| ||||||||||||  |||||||| |||||||||||| |||||||||||    
T  23127321 caaaaaattattatcgttctctcttctc--tttctcttgtaccaaaccatacatcaaatctac 23127381  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 47926515 - 47926570
Alignment:
Q  8 aaaacaaagataataatatgtttaccaaaaagtaaattaaatttgacaaaggacct 63  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||    
T  47926515 aaaacaaaaataataatatgtttatcaaaaagtaaattaaatttgacaaagaacct 47926570  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 50373042 - 50372992
Alignment:
Q  8 aaaacaaagataataatatg-tttaccaaaaagtaaattaaatttgacaaa 57  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  50373042 aaaacaaagataataatataatttaccaaaaagtaaattaaatttgacaaa 50372992  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 47926635 - 47926706
Alignment:
Q  128 caaaaaattactatctttctctcttctcaat-----ttctcttataccaaaccataaatcaaatctaccctat 195  Q
    |||||||||||||||||||| | ||||||||     ||||||||||||||||||| |||||||||||| ||||    
T  47926635 caaaaaattactatctttcttttttctcaatttctcttctcttataccaaaccat-aatcaaatctactctat 47926706  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 30721826 - 30721793
Alignment:
Q  157 atttctcttataccaaaccataaatcaaatctac 190  Q
    |||||||||||||||||||||| |||||||||||    
T  30721826 atttctcttataccaaaccatacatcaaatctac 30721793  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 2020292 - 2020255
Alignment:
Q  128 caaaaaattactatctttctctcttctcaatttctctt 165  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2020292 caaaaaattactatctttctctcttctcaatttctctt 2020255  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 2020393 - 2020360
Alignment:
Q  28 tttaccaaaaagtaaattaaatttgacaaaggac 61  Q
    ||||||||||||||||||||||||||||||||||    
T  2020393 tttaccaaaaagtaaattaaatttgacaaaggac 2020360  T

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